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Ramos, JJM, Afonso CAM, Branco LC.  2003.  Glass transition relaxation and fragility in two room temperature ionic liquids. Journal of Thermal Analysis and Calorimetry. 71:659-666., Number 2 Abstract
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Rampi, MA, Indelli MT, Scandola F, Pina F, Parola AJ.  1996.  Photophysics of supercomplexes. Adduct between Ru(bpy)(CN)(4)(2-) and the 32 ane-N8H88+ polyaza macrocycle, 1996. Inorganic Chemistry. 35:3355-3361. Abstract

The formation of a supercomplex between the Ru(bpy)(CN)(4)(2-) (bpy = 2,2'-bipyridine) complex and the [32]-ane-N8H88+ macrocycle (1) has been studied in water and in acetonitrile. In acetonitrile, supercomplex formation is accompanied by (i) large hypsochromic shifts in the absorption spectrum (color changes from deep violet to yellow) and in the emission spectrum, (ii) large anodic shifts in standard oxidation (0.73 V) and reduction (0.37 V) potentials, (iii) typical shifts of H-1-NMR signals for the macrocycle N-bound protons and the complex bipyridine protons, and (iv) a large increase in the MLCT excited-state lifetime of the complex. In water, the spectral shifts and the changes in standard potential are much less pronounced, but supercomplex formation is evidenced by C-13-NMR (and H-1-NMR) and by emission lifetime changes. In both solvents, supercomplex formation is complete in 1:1, 1.0 x 10(-4) M solutions, indicating very large stability constant values. A structure of the supercomplex with the macrocycle bound in a ''boat'' conformation to the four cyanide ligands of the complex, plausible in terms of molecular models, is consistent with all the experimental data. In water, the supercomplex further associates with added negative species containing carboxylate functions, as shown by partial reversal of the lifetime changes. When the added species is also a potential electron transfer quencher (such as, e.g., Rh(dcb)(3)(3-), dcb = 4,4'-dicarboxy-2,2'-bipyridine), however, association is not accompanied by quenching. This behavior is attributed to the structure of the supercomplex-quencher adduct, in which the macrocycle acts as an insulating spacer between the excited complex and the quencher.

Reimao-Pinto, MM, Cordeiro A, Almeida C, Pinheiro AV, Moro A, Lima JC, Baptista PV.  2014.  Dual-color control of nucleotide polymerization sensed by a fluorescence actuator. Photochemical & Photobiological Sciences. 13:751-756., Number 5 Abstract
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Rodriguez, L, Lodeiro C, Lima JC, Crehuet R.  2008.  Neutral gold(I) metallosupramolecular compounds: Synthesis and characterization, photophysical properties, and density functional theory studies. Inorganic Chemistry. 47:4952-4962., Number 11 Abstract
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Rodriguez, L, Lima JC, Ferrer M, Rossell O, Engeser M.  2012.  3D Au-Ag heterometallic supramolecular cage: Triplet capture by heavy atom effect. Inorganica Chimica Acta. 381:195-202. Abstract
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Rodriguez, L, Delgado-Pinar E, Sornosa-Ten A, Alarcon J, Garcia-Espana E, Cano M, Lima JC, Pina F.  2009.  Effect of Water/Carboxymethylcellulose Gel on the Excimer Formation of Polyamine Ligands Functionalized with Naphthalene. Journal of Physical Chemistry B. 113:15455-15459., Number 47 Abstract
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Rodriguez, L, Lima JC, Parola JA, Pina F, Meitz R, Aucejo R, Garcia-Espana E, Llinares JM, Soriano C, Alarcon J.  2008.  Anion detection by fluorescent Zn(II) complexes of functionalized polyamine ligands. Inorganic Chemistry. 47:6173-6183., Number 14 Abstract
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Rodriguez, L, Ferrer M, Crehuet R, Anglada J, Lima JC.  2012.  Correlation between Photophysical Parameters and Gold-Gold Distances in Gold(I) (4-Pyridyl)ethynyl Complexes. Inorganic Chemistry. 51:7636-7641., Number 14 Abstract
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Rodriguez, L, Alves S, Lima JC, Parola AJ, Pina F, Soriano C, Albelda T, Garcia-Espana E.  2003.  Supramolecular interactions of hexacyanocobaltate(III) with polyamine receptors containing a terminal anthracene sensor, 2003. Journal of Photochemistry and Photobiology a-Chemistry. 159:253-258. Abstract

The fluorescence emission properties of a series of chemosensors containing a polyamine receptor bearing an anthracene signaling unit were studied. The fluorescence emission intensity is dependent on the protonation degree of the receptor, the fully protonated form exhibiting the highest emission intensity. By removing protons from the nitrogens a quenching effect can be observed, due to an electron-transfer from the amine to the excited fluorophore. The rate constant of the quenching process is exponentially dependent on the distance of the nitrogen from which the electron is transferred (beta = 0.6Angstrom(-1)). The ability of the chemosensors for signaling anions was tested through the model anion hexacyanocobaltate(III). The temperature dependence of the association constants shows that at least for this compound, the change in solvation entropy is probably the controlling parameter to account for the binding. (C) 2003 Elsevier Science B.V. All rights reserved.

Rodriguez, L, Lima JC, Pina F, Cacciapaglia R, Di Stefano S, Ruggi A.  2011.  Photophysical Study of Naphthalenophanes: Evidence of Adduct Formation with Molecular Oxygen. Journal of Physical Chemistry a. 115:123-127., Number 2 Abstract
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Rodriguez, L, Ferrer M, Rossell O, Duarte FJS, Santos GA, Lima JC.  2009.  Solvent effects on the absorption and emission of [Re(R(2)bpy)(CO)(3)X] complexes and their sensitivity to CO2 in solution. Journal of Photochemistry and Photobiology a-Chemistry. 204:174-182., Number 2-3 Abstract
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Roldao, A, Mellado MCM, Lima JC, Carrondo MJT, Alves PM, Oliveira R.  2012.  On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP. Plos Computational Biology. 8, Number 2 Abstract
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Romero, MA, Basilio N, Moro AJ, Domingues M, Gonzalez-Delgado JA, Arteaga JF, Pischel U.  2017.  {Photocaged Competitor Guests: A General Approach Toward Light-Activated Cargo Release From Cucurbiturils}, {SEP 21}. {CHEMISTRY-A EUROPEAN JOURNAL}. {23}:{13105-13111}., Number {53} Abstract
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Romero, MA, Basilio N, Moro AJ, Domingues M, Gonzalez-Delgado JA, Arteaga JF, Pischel U.  2017.  Photocaged Competitor Guests: A General Approach Toward Light-Activated Cargo Release From Cucurbiturils, 2017. Chemistry-a European Journal. 23(53):13105-13111. Abstract
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Rondao, R, de Melo JS, Melo MJ, Parola AJ.  2012.  Excited-State Isomerization of Leuco Indigo, 2012. Journal of Physical Chemistry A. 116:2826-2832. Abstract

The photoreaction of indigo and two other derivatives in its reduced (leuco) form was investigated by absorption and fluorescence (steady-state and time-resolved) techniques. The fluorescence quantum yield (phi(F)) dependence with the UV irradiation time was found to increase up to a value of phi(F) approximate to 0.2-0.3 (after 16 min) for indigo and phi(F) = 0.2 (at similar to 150 min) for its derivative 4,4'-dibutoxy-7,7'-dimethoxy-5,5'-dinitroindigo (DBMNI). With a model compound, where rotation around the central C-C bond is blocked, the phi(F) value was found constant with the UV irradiation time. Time-resolved fluorescence revealed that initially the decays are fitted with a biexponential law (with 0.12 and 2.17 ns), ending with an almost monoexponential decay (similar to 2.17 ns). Quantum yields for the isomerization photoreaction (phi(R)) were also obtained for indigo and DBMNI with values of 0.9 and 0.007, respectively. The results are rationalized in terms of a photoisomerization (conversion) reaction occurring in the first excited singlet state of trans to cis forms of leuco indigo.

Rondao, R, Seixas de Melo SJ, Bonifacio VDB, Melo MJ.  2010.  Dehydroindigo, the Forgotten Indigo and Its Contribution to the Color of Maya Blue. Journal of Physical Chemistry A. 114:1699-1708., Number 4 Abstract
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Rondao, R, de Melo JSS, Pina J, Melo MJ, Vitorino T, Parola AJ.  2013.  Brazilwood Reds: The (Photo)Chemistry of Brazilin and Brazilein, 2013. Journal of Physical Chemistry A. 117:10650-10660. Abstract

The ground and excited state (in the singlet state, S-1) acid-base equilibria, together with the photophysical properties of the two main constituents of brazilwood, brazilin and brazilein, have been investigated in aqueous solutions in the pH range: -1 < pH < 10. Brazilin is the colorless reduced form of brazilein where three ground and three excited state species (BredHn, with n = 2-4 representing the protonated hydroxyl groups) are observed with two corresponding acidity constants: pK(a1) = 6.6 and pK(a2) = 9.4 (pK(a1)(*) = 4.7 and pK(a2)(*) = 9.9, obtained from the Forster cycle). In the case of brazilein, three ground species (pK(a1) = 6.5 and pK(a2) = 9.5) and four excited state species were identified (again from the Forster cycle: pK(a1)(*) = 3.9 and pK(a2)(*) = 9.8). The colorless species (brazilin) presents a high fluorescence quantum yield (phi(F) = 0.33) and competitive radiative channel (k(F) = 1.3 x 10(9) s(-1)) over radiationless processes (k(NR) = 2.6 x 10(9) s(-1)). In contrast to this behavior, brazilein displays a phi(F) value 2 orders of magnitude lower and a dominance of the radiationless decay pathways, which is suggested to be linked to an excited state proton transfer leading to a quinoidal-like structure. This is further supported by time-resolved data (obtained in a ps time domain). The overall data indicates that brazilin is more prone to degradation than brazilein, mainly due to the high efficiency of the racliationless decay channel (likely through internal conversion), which confers a stabilizing inherent characteristic to the latter. In the case of brazilein, the efficiency of the radiationless channel is linked to an excited state intramolecular proton transfer resulting from an excited state equilibrium involving neutral and zwitterionic tautomeric species of this compound. Furthermore, a theoretical study has been performed with the determination of the optimized ground-state and excited molecular geometries for the two compounds together with the prediction of the lowest vertical one-electron excitation energy and the relevant molecular orbital contours and charge densities changes using density functional theory calculations. These were found to corroborate differences in acidity in the ground and excited states.

Roque, A, Lodeiro C, Pina F, Maestri M, Dumas S, Passaniti P, Balzani V.  2003.  Multistate/multifunctional systems. A thermodynamic, kinetic, and photochemical investigation of the 4 '-dimethylaminoflavylium compound. Journal of the American Chemical Society. 125:987-994., Number 4 Abstract
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Roque, A, Pina F, Alves S, Ballardini R, Maestri M, Balzani V.  1999.  Micelle effect on the 'write-lock-read-unlock-erase' cycle of 4 '-hydroxyflavylium ion. Journal of Materials Chemistry. 9:2265-2269., Number 9 Abstract
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Roque, A, Lima JC, Parola AJ, Pina F.  2007.  Substitution and solvent effects in the chalcones isomerization barrier of flavylium photochromic systems, 2007. Photochemical & Photobiological Sciences. 6:381-385. Abstract

Useful application of photochromic compounds as optical memories implies the existence of a large kinetic barrier between the forms interconverted by light. In the case of flavylium salts, the ground state isomerization barrier between the photoisomerizable chalcone isomers is shown to correlate with the electron donating ability of the substituents, measured by their effects in the H-1 NMR chemical shifts of the aromatic protons. Substitution with electron donating groups in ring A lowers the barrier while substitution at ring B has the opposite effect. However, in water, the observed increase is higher than expected in the case of compound 4', 9-dihydroxychalcone when compared with the analogous 4'-dimethylamino-9-hydroxychalcone, containing a better electron donating group in the same position. Our interpretation is that the water network is providing an efficient pathway to form tautomers. In acetonitrile, unlike water, the expected order is indeed observed: E-a( 4', 9-dihydroxychalcone) = 60 kJ mol(-1) < E-a ( 4'-dimethylamino-9-hydroxychalcone) = 69 kJ mol(-1).

Roque, A, Lodeiro C, Pina F, Maestri M, Ballardini R, Balzani V.  2002.  Photochromic properties of 3-methyl-substituted flavylium salts. European Journal of Organic Chemistry. :2699-2709., Number 16 Abstract
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Rosa, J, Conde J, de la Fuente JM, Lima JC, Baptista PV.  2012.  Gold-nanobeacons for real-time monitoring of RNA synthesis. Biosensors & Bioelectronics. 36:161-167., Number 1 Abstract
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Rosa, JP, Lima JC, Baptista PV.  2011.  Experimental photophysical characterization of fluorophores in the vicinity of gold nanoparticles. Nanotechnology. 22, Number 41 Abstract
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Rosatella, AA, Afonso CAM, Branco LC.  2011.  Oxidation of Cyclohexene to trans-1,2-Cyclohexanediol Promoted by p-Toluenesulfonic Acid without Organic Solvents. Journal of Chemical Education. 88:1002-1003., Number 7 Abstract
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Rosatella, AA, Branco LC, Afonso CAM.  2009.  Studies on dissolution of carbohydrates in ionic liquids and extraction from aqueous phase. Green Chemistry. 11:1406-1413., Number 9 Abstract
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