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2010
Cardoso, T.  2010.  O uso eficiente da água nos edifícios de habitação. Faculdade de Ciências e Tecnologia. (Amado, Miguel, Ed.)., Lisbon Abstract

he lack of drinking water involves the entire world population and should be viewed as an inherent reality that must be investigated and solved.
This dissertation analyzes the implications that the consumption of drinking water has in the world and its consequences in Portugal. In order to focus the work in the area of Civil Engineering, the thesis studies the consumption of water and its efficiency in buildings, as well as measures that contribute to an increased efficiency for this consumption, both in terms of passive devices as in terms of water reuse, could it be rainwater or waste water.
The study of the efficiency of water consumption in residential buildings is done separately for family buildings and for multifamily buildings, thus discriminating which are the most efficient measures to reduce consumption in each one. Based on this division it is possible to verify that the use of rainwater is a measure that can reduce water consumption and should be implemented in family buildings. Moreover, reuse of waste water shows that it is possible to reduce and even get a surplus of water for use in toilets and irrigation of green spaces adjacent. This measure despite being highly efficient needs normative studies in order to be properly dimensioned and ensure an acceptable water quality, i.e., colorless, odorless and without toxic waste to the population.
The last chapter describes activities with the aim of increasing the efficiency of urban consumption, separately for each one of the phases of the building life cycle and finally presents a table summarizing the implementation of the different methodologies proposed.

Morgado, L, Fernandes AP, Londer YY, Bruix M, Salgueiro CA.  2010.  One simple step in the identification of the cofactors signals, one giant leap for the solution structure determination of multiheme proteins. Biochemical and Biophysical Research Communications. 393(3):466-470. AbstractWebsite

Multiheme proteins play major roles in various biological systems. Structural information on these systems in solution is crucial to understand their functional mechanisms. However, the presence of numerous proton-containing groups in the heme cofactors and the magnetic properties of the heme iron, in particular in the oxidised state, complicates significantly the assignment of the NMR signals. Consequently, the multiheme proteins superfamily is extremely under-represented in structural databases, which constitutes a severe bottleneck in the elucidation of their structural–functional relationships. In this work, we present a strategy that simplifies the assignment of the NMR signals in multiheme proteins and, concomitantly, their solution structure determination, using the triheme cytochrome PpcA from the bacterium Geobacter sulfurreducens as a model. Cost-effective isotopic labeling was used to double label (13C/15N) the protein in its polypeptide chain, with the correct folding and heme post-translational modifications. The combined analysis of 1H–13C HSQC NMR spectra obtained for labeled and unlabeled samples of PpcA allowed a straight discrimination between the heme cofactors and the polypeptide chain signals and their confident assignment. The results presented here will be the foundations to assist solution structure determination of multiheme proteins, which are still very scarce in the literature.

Doria, G, Baumgartner BG, Franco R, Baptista PV.  2010.  OPTIMIZING Au-NANOPROBES FOR SPECIFIC SEQUENCE DISCRIMINATION. Biointerfaces. 77:122–124.
Morgado, L, Saraiva IH, Louro RO, Salgueiro CA.  2010.  Orientation of the axial ligands and magnetic properties of the hemes in the triheme ferricytochrome PpcA from G. sulfurreducens determined by paramagnetic NMR. FEBS Letters. 584(15):3442-3445. AbstractWebsite

The geometry of the axial ligands of the hemes in the triheme cytochrome PpcA from Geobacter sulfurreducens was determined in solution for the ferric form using the unambiguous assignment of the NMR signals of the α-substituents of the hemes. The paramagnetic 13C shifts of the hemes can be used to define the heme electronic structure, the geometry of the axial ligands, and the magnetic susceptibility tensor. The latter establishes the magnitude and geometrical dependence of the pseudocontact shifts, which are crucial to warrant reliable structural constraints for a detailed structural characterization of this paramagnetic protein in solution.

Ortigueira, MD.  2010.  On the Fractional Linear Scale Invariant Systems. IEEE Transactions on Signal Processing. 58:6406–6410., Number 12 AbstractWebsite

The linear scale invariant systems are introduced for both integer and fractional orders. They are defined by the generalized Euler-Cauchy differential equation. The quantum fractional derivatives are suitable for dealing with this kind of systems, allowing us to define impulse response and transfer function with the help of the Mellin transform. It is shown how to compute the impulse responses corresponding to the two half plane regions of convergence of the transfer function.

2009
Ortigueira, MD.  2009.  On the Linear Scale Fractional Systems: An Application of the Fractional Quantum Derivative. On the Linear Scale Fractional Systems: An Application of the Fractional Quantum Derivative. Abstract

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Compagna, D, Derpmann S, Mauz K.  2009.  The Operation of Autonomous Mobile Robot Assistants in the Environment of Care Facilities Adopting a User-Centered Development Design. Enterprise and Work Innovation Studies. 5:11-24. AbstractWebsite

The successful development of autonomous mobile robot assistants depends significantly on the well-balanced reconcilements of the technically possible and the socially desirable. Based on empirical research 2 substantiated conclusions can be established for the suitability of "scenario-based design" (Rosson/Carroll 2003) for the successful development of mobile robot assistants and automated guided vehicles to be applied for service functions in stationary care facilities for seniors.

Pokkuluri, PR, Londer YY, Wood SJ, Duke NEC, Morgado L, Salgueiro CA, Schiffer M.  2009.  Outer membrane cytochrome c, OmcF, from Geobacter sulfurreducens: High structural similarity to an algal cytochrome c6. Proteins: Structure, Function, and Bioinformatics. 74(1):266-270. AbstractWebsite

No abstract included.

Ortigueira, MD.  2009.  On the Linear Scale Fractional Systems: An Application of the Fractional Quantum Derivative. On the Linear Scale Fractional Systems: An Application of the Fractional Quantum Derivative. Abstract
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Gomes, R, Laia CAT, Pina F.  2009.  On the Mechanism of Photochromism of 4 '-N,N-Dimethylamino-7-hydroxyflavylium in Pluronic F127. Journal of Physical Chemistry B. 113:11134-11146., Number 32 AbstractWebsite
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Costa, SMB, Andrade SM, Togashi DM, Paulo PMR, Laia CAT, Viseu IM, da Silva AGM.  2009.  Optical spectroscopy and photochemistry of porphyrins and phthalocyanines. Journal of Porphyrins and Phthalocyanines. 13:509-517., Number 4-5 AbstractWebsite
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2008
Rato, RT, Ortigueira M, Batista A.  2008.  On the HHT, its problems, and some solutions, August. Mechanical Systems and Signal Processing. 22:1374–1394., Number 6: Elsevier AbstractWebsite

The empirical mode decomposition (EMD) is reviewed and some questions related to its effective performance are discussed. Its interpretation in terms of AM?FM modulation is done. Solutions for its drawbacks are proposed. Numerical simulations are carried out to empirically evaluate the proposed modified EMD.

Leal, A, Ferreira JC, Dias AI, Calado E.  2008.  Origin of frontal lobe spikes in the early onset benign occipital lobe epilepsy (Panayiotopoulos syndrome). Clinical Neurophysiology. 119:1985-1991.
Rato, RT, Ortigueira MD, Batista AG.  2008.  On the HHT, its problems, and some solutions. Mechanical Systems and Signal Processing. :1374–1394. Abstract
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Ortigueira, MD, Batista AG.  2008.  On the relation between the fractional Brownian motion and the fractional derivatives. Physics Letters. A:958–968. Abstract
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2007
Costa, VM, Silva R, Ferreira LM, Branco PS, Carvalho F, Bastos ML, Carvalho RA, Carvalho M, Remiao F.  2007.  Oxidation process of adrenaline in freshly isolated rat cardiomyocytes: Formation of adrenochrome, quinoproteins, and GSH adduct, AUG. CHEMICAL RESEARCH IN TOXICOLOGY. 20:1183-1191., Number 8 Abstract
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Brás, AR, Dionísio M, Huth H, Shick C, Schoenhals A.  2007.  Origin of glassy dynamics in a liquid crystal studied by broadband dielectric and specific heat spectroscopy. Physical Review E. 75:061708-1.Website
2006
Ortigueira, M, Batista A.  2006.  On the fractional derivative of stationary stochastic processes, September. CST2006 & ECT2006 Conferences. Abstract
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Ortigueira, M, Batista A.  2006.  On the fractional derivative of stationary stochastic processes, September. CST2006 & ECT2006 Conferences. Abstract

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Ortigueira, MD, Batista AG.  2006.  On the fractional derivative of stationary stochastic processes. CST2006 & ECT2006 Conferences. Abstract
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2005
Boer, DR, Muller A, Fetzner S, Lowe DJ, Romao MJ.  2005.  On the purification and preliminary crystallographic analysis of isoquinoline 1-oxidoreductase from Brevundimonas diminuta 7. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 61:137-140. AbstractWebsite
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Schafer, T, Branco LC, Fortunato R, Izak P, Rodrigues CM, Afonso CAM, Crespo JG.  2005.  Opportunities for membrane separation processes using ionic liquids. Ionic Liquids Iiib: Fundamentals, Progress, Challenges and Opportunities: Transformations and Processes. 902(Rogers, R. D., Seddon, K. R., Eds.).:97-110. Abstract
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Serbanovic, A, Branco LC, da Ponte MN, Afonso CAM.  2005.  Osmium catalyzed asymmetric dihydroxylation of methyl trans-cinnamate in ionic liquids, followed by supercritical CO2 product recovery. Journal of Organometallic Chemistry. 690:3600-3608., Number 15 AbstractWebsite
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2004
Auchere, F, Sikkink R, Cordas C, Raleiras P, Tavares P, Moura I, Moura JJ.  2004.  Overexpression and purification of Treponema pallidum rubredoxin; kinetic evidence for a superoxide-mediated electron transfer with the superoxide reductase neelaredoxin, Oct. J Biol Inorg Chem. 9:839-49., Number 7 AbstractWebsite

Superoxide reductases are a class of non-haem iron enzymes which catalyse the monovalent reduction of the superoxide anion O2- into hydrogen peroxide and water. Treponema pallidum (Tp), the syphilis spirochete, expresses the gene for a superoxide reductase called neelaredoxin, having the iron protein rubredoxin as the putative electron donor necessary to complete the catalytic cycle. In this work, we present the first cloning, overexpression in Escherichia coli and purification of the Tp rubredoxin. Spectroscopic characterization of this 6 kDa protein allowed us to calculate the molar absorption coefficient of the 490 nm feature of ferric iron, epsilon=6.9+/-0.4 mM(-1) cm(-1). Moreover, the midpoint potential of Tp rubredoxin, determined using a glassy carbon electrode, was -76+/-5 mV. Reduced rubredoxin can be efficiently reoxidized upon addition of Na(2)IrCl(6)-oxidized neelaredoxin, in agreement with a direct electron transfer between the two proteins, with a stoichiometry of the electron transfer reaction of one molecule of oxidized rubredoxin per one molecule of neelaredoxin. In addition, in presence of a steady-state concentration of superoxide anion, the physiological substrate of neelaredoxin, reoxidation of rubredoxin was also observed in presence of catalytic amounts of superoxide reductase, and the rate of rubredoxin reoxidation was shown to be proportional to the concentration of neelaredoxin, in agreement with a bimolecular reaction, with a calculated k(app)=180 min(-1). Interestingly, similar experiments performed with a rubredoxin from the sulfate-reducing bacteria Desulfovibrio vulgaris resulted in a much lower value of k(app)=4.5 min(-1). Altogether, these results demonstrated the existence for a superoxide-mediated electron transfer between rubredoxin and neelaredoxin and confirmed the physiological character of this electron transfer reaction.

Auchere, F, Sikkink R, Cordas C, Raleiras P, Tavares P, Moura I, Moura JJG.  2004.  Overexpression and purification of Treponema pallidum rubredoxin; kinetic evidence for a superoxide-mediated electron transfer with the superoxide reductase neelaredoxin, Oct. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY. {9}:{839-849}., Number {7} Abstract

Superoxide reductases are a class of non-haem iron enzymes which catalyse the monovalent reduction of the superoxide anion O-2(-) into hydrogen peroxide and water. Treponema pallidum (Tp), the syphilis spirochete, expresses the gene for a superoxide reductase called neelaredoxin, having the iron protein rubredoxin as the putative electron donor necessary to complete the catalytic cycle. In this work, we present the first cloning, overexpression in Escherichia coli and purification of the Tp rubredoxin. Spectroscopic characterization of this 6 Da protein allowed us to calculate the molar absorption coefficient of the 490 nm feature of ferric iron, epsilon=6.9+/-0.4 mM(-1) cm(-1). Moreover, the midpoint potential of Tp rubredoxin, determined using a glassy carbon electrode, was -76+/-5 mV. Reduced rubredoxin can be efficiently reoxidized upon addition of Na2IrCl6-oxidized neelaredoxin, in agreement with a direct electron transfer between the two proteins, with a stoichiometry of the electron transfer reaction of one molecule of oxidized rubredoxin per one molecule of neelaredoxin. In addition, in presence of a steady-state concentration of superoxide anion, the physiological substrate of neelaredoxin, reoxidation of rubredoxin was also observed in presence of catalytic amounts of superoxide reductase, and the rate of rubredoxin reoxidation was shown to be proportional to the concentration of neelaredoxin, in agreement with a bimolecular reaction, with a calculated k(app)=180 min(-1). Interestingly, similar experiments performed with a rubredoxin from the sulfate-reducing bacteria Desulfovibrio vulgaris resulted in a much lower value of k(app)=4.5 min(-1). Altogether, these results demonstrated the existence for a superoxide-mediated electron transfer between rubredoxin and neelaredoxin and confirmed the physiological character of this electron transfer reaction.