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2014
Ruivo, A, Andrade SM, Rocha J, Laia CAT, Pina F.  2014.  Formation of Photoluminescent Lead Bromide Nanoparticles on Aluminoborosilicate Glass. Journal of Physical Chemistry C. 118:12436-12442., Number 23 AbstractWebsite
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2013
Capelo, {JL}, Baptista {PMRV}.  2013.  Fast nucleotide identification through fingerprinting using gold nanoparticle-based surface-assisted laser desorption/ionisation, jan. Talanta. 105:417–21., Number NA: Elsevier Abstract

We report a method centred on gold nanoparticle-based surface-assisted laser desorption/ionisation for analysis of deoxynucleotides and alkylated nucleobases. Gold nanoparticles allow for enhanced analysis capability by eliminating undesired signature peaks; thus more elegant mass spectra can be attained that allow identification by nucleotide mass fingerprint. The resulting fingerprinting patterns on the spectra are compared and associated with the presence of different nucleotides in the sample. This method can be easily extended to modified nucleotides implicated in genome lesions due to exposure to environment chemicals, such as DNA adducts (e.g. guanine adducts). The use of gold nanoparticles for surface-assisted laser desorption/ionisation can be an useful tool to resolve common issues of background noise when analysing nucleic acids samples.

Simão, J, Veiga L.  2013.  Flexible SLAs in the Cloud with Partial Utility-driven Scheduling (Best-Paper Award Runner-up), dec. IEEE 5th International Conference on Cloud Computing Technology and Science (CloudCom 2013). : IEEE Abstract2013-cloudcom-simao-a-best-paper-award-runner-up.pdf

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Avo, J, Martins S, Jorge Parola A, Lima JC, Branco PS, Prates Ramalho JP, Pereira A.  2013.  A Family of Styrylcoumarins: Synthesis, Spectroscopic, Photophysical and Photochemical Properties, AUG. CHEMPLUSCHEM. 78:789-792., Number 8 Abstract
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Avo, J, Martins S, Parola AJ, Lima JC, Branco PS, Ramalho JPP, Pereira A.  2013.  A Family of Styrylcoumarins: Synthesis, Spectroscopic, Photophysical and Photochemical Properties, 2013. Chempluschem. 78:789-792. AbstractWebsite
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Maia, MJ.  2013.  Foresight Exercises as a tool for decision-making: the example of two case studies in health. Enterprise and Work Innovation Studies. 9(9):39-66. AbstractWebsite

Healthcare systems are characterized by a rapid technology push and demand. Most decisions taken in this field usually are accompanied by risk and uncertainties. Due to financial constrains (common in every healthcare system), all decision must be made based on evidences of reliable studies. It may be not possible to know the future needs of healthcare systems in general, but it should be possible to foreseen them. This paper aims to shed some light on how prospective analysis can be an adding tool for the decision-making process, by enhancing exploratory and strategic dimension of planning and managing in a sensitive field such as healthcare. In order to provide for a simple overview on foresight exercises applied to health, this paper presents two study-cases that applied different methods. Since different foresight methods were applied, a comparative case-study analysis was applied, taking into consideration the following aspects of the exercise: aim, methodology, stakeholders and outputs. The specific objectives of this report are: to explore the usage of foresight methods applied to healthcare level in two different countries and therefore to understand if there are any similarities in the approach; and based on the analysis results, to develop recommendations for healthcare level decision-making in general. The results of this report can be useful for a better understanding on how foresight methods can be applied in healthcare and their importance. This article can help healthcare professionals, providing them a glimpse of some steps on the use of these foresight methods, so they can be more alert for foresight methodological framework and their practical applications. The knowledge on how to apply foresight methodology can be a differential and potential asset of a well-organized and informed institution, as well as an asset for a shared and participative strategic planning.

Dantas, JM, Tomaz DM, Morgado L, Salgueiro CA.  2013.  Functional characterization of PccH, a key cytochrome for electron transfer from electrodes to the bacterium Geobacter sulfurreducens. FEBS Letters. 587(16):2662-2668. AbstractWebsite

The cytochrome PccH from Geobacter sulfurreducens (Gs) plays a crucial role in current-consuming fumarate-reducing biofilms. Deletion of pccH gene inhibited completely electron transfer from electrodes toward Gs cells. The pccH gene was cloned and the protein heterologously expressed in Escherichia coli. Complementary biophysical techniques including CD, UV-visible and NMR spectroscopy were used to characterize PccH. This cytochrome contains one low-spin c-type heme with His-Met axial coordination and unusual low-reduction potential. This reduction potential is pH-dependent, within the Gs physiological pH range, and is discussed within the context of the electron transfer mechanisms from electrodes to Gs cells.

Barroso, T, Hussain A, Roque ACA, Aguiar‐Ricardo A.  2013.  Functional monolithic platforms: Chromatographic tools for antibody purification. Biotechnology journal. 8(6):671–681. AbstractWebsite

Polymer monoliths are an efficient platform for antibody purification. The use of monoclonal antibodies (mAbs) and engineered antibody structures as therapeutics has increased exponentially over the past few decades. Several approaches use polymer monoliths to purify large quantities of antibody with defined clinical and performance requirements. Functional monolithic supports have attracted a great deal of attention as they offer practical advantages for antibody purification, such as more rapid analysis, smaller sample volume requirements and the opportunity for a greater target molecule enrichment. This review focuses on the development of synthetic and natural polymer-based monoliths for antibody purification. The materials and methods employed in monolith production are discussed, highlighting the properties of each system. We also review the structural characterization techniques available using monolithic systems and their performance under different chromatographic approaches to antibody capture and release. Finally, a summary of monolithic platforms developed for antibody separation is presented, as well as expected trends in research to solve current and future challenges in this field. This review comprises a comprehensive analysis of proposed solutions highlighting the remarkable potential of monolithic platforms.

Gawande, MB, Guo H, Rathi AK, Branco PS, Chen Y, Varma RS, Peng D-L.  2013.  First application of core-shell Ag@Ni magnetic nanocatalyst for transfer hydrogenation reactions of aromatic nitro and carbonyl compounds. RSC ADVANCES. 3:1050-1054., Number 4 Abstract
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Petrov, V, Gavara R, Dangles O, Al Bittar S, Mora-Soumille N, Pina F.  2013.  A flash photolysis and stopped-flow spectroscopy study of 3 ',4 '-dihydroxy-7-O-beta-D-glucopyranosyloxyflavylium chloride, an anthocyanin analogue exhibiting efficient photochromic properties. Photochemical & Photobiological Sciences. 12:576-581., Number 3 AbstractWebsite
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Aguilo, E, Gavara R, Lima JC, Llorca J, Rodriguez L.  2013.  From Au(I) organometallic hydrogels to well-defined Au(0) nanoparticles. Journal of Materials Chemistry C. 1:5538-5547., Number 35 Abstract
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2012
Bruni, R, Ferreira C, Kauer AK.  2012.  First-Order Dynamic Logic for Compensable Processes, June 14-15. Coordination Models and Languages - 14th International Conference. :104-121., Stockholm, Swenden Abstract

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Gouveia, JP.  2012.  Forecasting energy for residential buildings: contributions from a bottom-up methodology of energy services demand, 22-24 March. Workshop on Energy and Society. , Lisbon, Portugal: Institute of Social Sciences (ICS-UL)
Morgado, L, Dantas JM, Bruix M, Londer YY, Salgueiro CA.  2012.  Fine Tuning of Redox Networks on Multiheme Cytochromes from Geobacter sulfurreducens Drives Physiological Electron/Proton Energy Transduction. Bioinorganic Chemistry and Applications. 2012(Article ID 298739):1-9. AbstractWebsite

The bacterium Geobacter sulfurreducens (Gs) can grow in the presence of extracellular terminal acceptors, a property that is currently explored to harvest electricity from aquatic sediments and waste organic matter into microbial fuel cells. A family composed of five triheme cytochromes (PpcA-E) was identified in Gs. These cytochromes play a crucial role by bridging the electron transfer from oxidation of cytoplasmic donors to the cell exterior and assisting the reduction of extracellular terminal acceptors. The detailed thermodynamic characterization of such proteins showed that PpcA and PpcD have an important redox-Bohr effect that might implicate these proteins in the e−/H+ coupling mechanisms to sustain cellular growth. The physiological relevance of the redox-Bohr effect in these proteins was studied by determining the fractional contribution of each individual redox-microstate at different pH values. For both proteins, oxidation progresses from a particular protonated microstate to a particular deprotonated one, over specific pH ranges. The preferred e−/H+ transfer pathway established by the selected microstates indicates that both proteins are functionally designed to couple e−/H+ transfer at the physiological pH range for cellular growth.

Borlido, L, Azevedo AM, Sousa AG, Oliveira PH, Roque ACA, Aires-Barros MR.  2012.  Fishing human monoclonal antibodies from a CHO cell supernatant with boronic acid magnetic particles. Journal of Chromatography B. 903:163-170. AbstractWebsite

In this work we have evaluated the potential of boronic acid functionalized magnetic particles for the one-step capture of a human monoclonal antibody (mAb) from a Chinese hamster ovary (CHO) cell culture supernatant. For comparison, Protein A coated magnetic particles were also used. The most important factor influencing the overall process yield and product purity in boronic acid particles was found to be the binding pH. Basic pH values promoted higher purities while resulting in decreased yields due to the competing effects of molecules such as glucose and lactate present in the cell culture supernatant. After optimization, the particles were successfully used in a multi-cycle purification process of the mAb from the CHO feedstock. Boronic acid particles were able to achieve an average overall yield of 86% with 88% removal of CHO host cell proteins (HCP) when the binding was performed at pH 7.4, while at pH 8.5 these values were 58% and 97%, respectively. In both cases, genomic DNA removal was in excess of 97%. Comparatively, Protein A particles recorded an average overall yield of 80% and an HCP removal greater than 99%. The adsorption of the mAb to the boronic acid particles was shown to be mediated by strong affinity interactions. Overall, boronic acid based purification processes can offer a cost-effective alternative to Protein A as the direct capturing step from the mammalian cell culture.

Sandu, ICA, Roque ACA, Matteini P, Schäfer S, Agati G, Correia CR, Viana JFFP.  2012.  Fluorescence recognition of proteinaceous binders in works of art by a novel integrated system of investigation. Microscopy Research and Technique. 75(3):316-24. AbstractWebsite

Fluorescence microscopy and microspectrofluorometry are important tools in the characterization and identification of proteins, offering a great range of applications in conservation science. Because of their high selectivity and sensitivity, the combination of these techniques can be exploited for improved recognition and quantification of proteinaceous binders in paintings and polychromed works of art. The present article explores an analytical protocol integrating fluorescence microscopy and fluorometry for both identification and mapping of proteinaceous binders (in particular egg and glues) in paint samples. The study has been carried out on historically accurate reconstructions simulating the structure and composition of tempera and oil paints containing these binders. To assess the spatial distribution of specific proteins within the paint layers, cross-sections from the reconstructions were analyzed by fluorescence imaging after staining with an exogenous fluorophore. Reference fluorescence spectra for each layer were acquired by a multichannel spectral analyzer and compared after Gaussian deconvolution. The results obtained demonstrated the effectiveness of the integrated protocol, highlighting the potential for the use of fluorescent staining coupled with microspectrofluorometry as a routine diagnostic tool in conservation science. The current work creates a set of fully characterized reference samples for further comparison with those from actual works of art.

Gawande, MB, Velhinho A, Nogueira ID, Ghumman CAA, Teodoro OMND, Branco PS.  2012.  A facile synthesis of cysteine-ferrite magnetic nanoparticles for application in multicomponent reactions-a sustainable protocol. RSC ADVANCES. 2:6144-6149., Number 15 Abstract
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Coelho, C, Mahro M, Trincao J, Carvalho ATP, Ramos MJ, Terao M, Garattini E, Leimkuehler S, Romao MJ.  2012.  The First Mammalian Aldehyde Oxidase Crystal Structure INSIGHTS INTO SUBSTRATE SPECIFICITY. Journal of Biological Chemistry. 287:40690-40702., Number 48 AbstractWebsite
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2011
Moniz, AB.  2011.  From the Lisbon strategy to EU2020: illusion or progress for european economies?, Jan , Number 01/2011: Universidade Nova de Lisboa, IET-Research on Enterprise and Work Innovation, Faculty of Science and Technology Abstract

The majority of papers published in the last decades on European Union policy strongly stress the importance of the so-called Lisbon Strategy approved in the year 2000. The same applies to studies and reports on the shift of the European countries towards modernisation and restructuring policy in recent years. This EU development strategy defines a new direction for the coordination of national policies. But why has it become so important? One of the reasons is the fact that many of the papers are based on the concept of “knowledge society” as the key driver for an increased competitiveness of all political and economic regions of Europe. In this context, the term “knowledge” means the inter-linkage of education (including training, qualification, skills) and innovation (including research, information and communication). The use of the concept represents an important shift in the European strategy: further development would not only be based on investment in material infrastructures, but also more on the immaterial ground. However, this Lisbon Strategy was criticised by many politicians and opinion-makers in the first years of this century because the European structures were not prepared for such a quick change. At the same time, the focus for investment moved away from the traditional support of industrial sectors (manufacturing, agriculture and fisheries, construction) towards the “new economy” sectors. The vision of a knowledge society remained appealing also in a changing international context: the Middle East wars (Afghanistan, Iraq and Israel-Palestine) and the fast growth of the Chinese economy. However, the shadows of new recessions have strongly questioned the options made by the European Council. New challenges have emerged with the need to redefine collective strategies in terms of European development as set by the Lisbon strategy. “Europe 2020” is one more attempt to define a new strategy. But at present no clear path has been identifi

Barros, MT, Mouquinho AI, Petrova KT, Saavedra MD, Sotomayor JC.  2011.  Fast synthesis employing a microwave assisted neat protocol of new monomers potentially useful for the preparation of PDLC films. Cent. Eur. J. Chem.. 9(4):557-566.
Mouquinho, A, Saavedra M, Maiau A, Petrova K, Barros MT, Figueirinhas JL, Sotomayor J.  2011.  Films based on new methacrylate monomers: synthesis, characterisation and electro-optical properties. Mol. Cryst. Liq. Cryst.. 542(1):132-140.
Ortigueira, MD.  2011.  Fractional Calculus for Scientists and Engineers. , Fractional Calculus for Scientists and Engineers: 84: Springer-Verlag AbstractWebsite

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Ortigueira, MD.  2011.  The Fractional Quantum Derivative and the Fractional Linear Scale Invariant Systems. Fractional Calculus for Scientists and Engineers. :123-144., 84: Springer-Verlag Abstract

The normal way of introducing the notion of derivative is by means of the limit of an incremental ratio that can assume three forms, depending the used translations as we saw in Chaps. 1 and 4. On the other hand, in those derivatives the limit operation is done over a set of points uniformly spaced: a linear scale was used. Here we present an alternative derivative, that is valid only for t {\ensuremath{>}} 0 or t {\ensuremath{<}} 0 and uses an exponential scale

Lewandowski, B, Listkowski A, Petrova K, Jarosz S.  2011.  Functionalisation of terminal positions of sucrose - Part II: Preparation of 1’,2,3,3’,4,4’-hexa-O-benzyl sucrose and 6,6’-bis-O-(2-hydroxyethyl)-1’,2,3,3’,4,4’-hexa-O-benzylsucrose. Carbohydrate Chemistry: Proven Synthetic Methods. (P. Kovac, Ed.).:407-425., New York: CRC Press, Taylor & Francis Group
Ortigueira, MD.  2011.  Fractional Calculus for Scientists and Engineers. Fractional Calculus for Scientists and Engineers. 84: Springer-Verlag AbstractWebsite
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