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2012
Pimenta, AFR, Baptista AC, Carvalho T, Brogueira P, Lourenço N, Afonso C, Barreiros S, Vidinha P, Borges JP.  2012.  Electrospinning of Ion Jelly fibers. Materials Letters. 83:161-164. AbstractWebsite

Ion Jelly materials combine the chemical versatility and conductivity of an ionic liquid (IL) with the morphological versatility of a biopolymer (gelatin). They exhibit very interesting properties, such as conductivities up to 10− 4 S cm− 1, and high thermostability up to 180 °C, and have been used successfully to design electrochromic windows. In this work we report on the preparation of Ion Jelly fibers through electrospinning in order to obtain high surface area conductive materials. We have used the IL 1-(2-hydroxyethyl)-3-methyl-imidazolium tetrafluoroborate ([C2OHmim]BF4), which exhibits conveniently high ionic conductivity (over 10− 3 S cm− 1) and electrochemical stability (electrochemical window over 6.0 V). The morphology of the obtained fibers was quantified using Scanning Electron Microscopy (SEM) and Atomic Force Microscopy (AFM). We found that on average the effect of the IL on fiber diameter differs for lower and higher IL concentrations and that this effect was correlated with the initial conductivity and viscosity of Ion Jelly electrospinning solution. Moreover we also found that conductivities of Ion Jelly fibers are of the same order of magnitude as the conductivities of Ion Jelly dense films (~ 10− 4 S cm− 1). To the best of our knowledge, this is the first report on the incorporation of an IL into gelatin fibers using electrospinning. This opens up new opportunities for the application of gelatin fibers in electrochemical and biomedical devices.

Guirgis, BSS, e Cunha CSá, Gomes I, Cavadas M, Silva I, Doria G, Blatch GL, Baptista PV, Pereira E, Azzazy HME, Mota MM, Prudêncio M, Franco R.  2012.  GOLD NANOPARTICLES-BASED FLUORESCENCE IMMUNOASSAY FOR MALARIA ANTIGEN DETECTION. Anal. Bioanal. Chem.. 402:1019-1027.
Parthiban, S., Gokulakrishnan, V., Elangovan, E., Gonçalves, G., Ramamurthi, K., Fortunato, Martins R.  2012.  High mobility and visible-near infrared transparent titanium doped indium oxide thin films produced by spray pyrolysis. Thin Solid Films. 524(1):268-271.
Santos, S, Marques V, Pires M, Silveira L, Oliveira H, Lanca V, Brito D, Madeira H, Esteves JF, Freitas A, Carreira IM, Gaspar IM, Monteiro C, Fernandes AR.  2012.  High resolution melting: improvements in the genetic diagnosis of hypertrophic cardiomyopathy in a Portuguese cohort. BMC Med Genet. 13:17.12santosbmcmg.pdf
Gokulakrishnan, V., Parthiban, S., Elangovan, E., Jeganathan, K., Kanjilal, D., Asokan, K., Martins, Fortunato, Ramamurthi K.  2012.  Investigation of O7+ swift heavy ion irradiation on molybdenum doped indium oxide thin films. Radiation Physics and Chemistry. 81(6):589-593.
SCUTARU, G, SANDU F, COCORADA E, PAVALACHE M, Gomes L, Coito F, MÖRSKY-LINDQUIST AK, TALABA D, NEUNDORF V, FEDAK V, Others.  2012.  Konsoliderad rapport ang{\aa}ende användning av VR och fjärrexperiment i utbildning. Abstract

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Wojcik, PJ, Cruz AS, Santos L, Pereira L, Martins R, Fortunato E.  2012.  Microstructure control of dual-phase inkjet-printed a-WO3/TiO2/WOX films for high-performance electrochromic applications. J. Mater. Chem. . 22:13268-13278.
Pereira, Barquinha, Gonçalves, G., Fortunato, Martins R.  2012.  Multicomponent dielectrics for oxide TFT. Proceedings . 8263
Musat, V, Fortunato E, Purica M, Mazilu M, do Rego AMB, Diaconu B, Busani T.  2012.  Multifunctional zinc oxide nanostructures for a new generation of devices. Mater. Chem. Phys. . 132 :339-346..
Mouquinho, AI, Petrova K, Barros MT, Sotomayor J.  2012.  New Polymer Networks for PDLC Films Application. New Polymers for Special Applications . (A. De-Souza-Gomes, Ed.).:139-164., Rijeka: InTech
Figueiredo, V, Elangovan E, Barros R, Pinto JV, Busani T, Martins R, Fortunato E.  2012.  p-Type CuxO Films Deposited at Room Temperature for Thin-Film Transistors. , J. Disp. Technol. . 8:41-47.
Martins, Figueiredo, V., Barros, R., Barquinha, Gonçalves, G., Pereira, Ferreira, Fortunato E.  2012.  P-type oxide based thin film transistors produced at low temperatures. SPIE. 8263
Dantas, JM, Morgado L, Londer YY, Fernandes AP, Louro RO, Pokkuluri PR, Schiffer M, Salgueiro CA.  2012.  Pivotal role of the strictly conserved aromatic residue F15 in the cytochrome c7 family. Journal of Biological Inorganic Chemistry. 17(1):11-24. AbstractWebsite

Cytochromes c7 are periplasmic triheme proteins that have been reported exclusively in δ-proteobacteria. The structures of five triheme cytochromes identified in Geobacter sulfurreducens and one in Desulfuromonas acetoxidans have been determined. In addition to the hemes and axial histidines, a single aromatic residue is conserved in all these proteins - phenylalanine 15 (F15). PpcA is a member of the G. sulfurreducens cytochrome c7 family that performs electron/proton energy transduction in addition to electron transfer that leads to the reduction of extracellular electron acceptors. For the first time we probed the role of the F15 residue in the PpcA functional mechanism, by replacing this residue with the aliphatic leucine by site-directed mutagenesis. The analysis of NMR spectra of both oxidized and reduced forms showed that the heme core and the overall fold of the mutated protein were not affected. However, the analysis of 1H-15N heteronuclear single quantum coherence NMR spectra evidenced local rearrangements in the α-helix placed between hemes I and III that lead to structural readjustments in the orientation of heme axial ligands. The detailed thermodynamic characterization of F15L mutant revealed that the reduction potentials are more negative and the redox-Bohr effect is decreased. The redox potential of heme III is most affected. It is of interest that the mutation in F15, located between hemes I and III in PpcA, changes the characteristics of the two hemes differently. Altogether, these modifications disrupt the balance of the global network of cooperativities, preventing the F15L mutant protein from performing a concerted electron/proton transfer.

SCUTARU, G, SANDU F, COCORADA E, PAVALACHE M, KRISTALY D, Gomes L, Coito F, MÖRSKY-LINDQUIST AK, CSEREY S, DASC{\u A}LU M, Others.  2012.  RELAZIONE SUGLI ASPETTI FORMATIVI. Abstract

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Morgado, L, Paixão VB, Schiffer M, Pokkuluri PR, Bruix M, Salgueiro CA.  2012.  Revealing the structural origin of the redox-Bohr effect: the first solution structure of a cytochrome from Geobacter sulfurreducens. Biochemical Journal. 441(1):179-187. AbstractWebsite

Gs (Geobacter sulfurreducens) can transfer electrons to the exterior of its cells, a property that makes it a preferential candidate for the development of biotechnological applications. Its genome encodes over 100 cytochromes and, despite their abundance and key functional roles, to date there is no structural information for these proteins in solution. The trihaem cytochrome PpcA might have a crucial role in the conversion of electronic energy into protonmotive force, a fundamental step for ATP synthesis in the presence of extracellular electron acceptors. In the present study, 15N-labelled PpcA was produced and NMR spectroscopy was used to determine its solution structure in the fully reduced state, its backbone dynamics and the pH-dependent conformational changes. The structure obtained is well defined, with an average pairwise rmsd (root mean square deviation) of 0.25 Å (1 Å=0.1 nm) for the backbone atoms and 0.99 Å for all heavy atoms, and constitutes the first solution structure of a Gs cytochrome. The redox-Bohr centre responsible for controlling the electron/proton transfer was identified, as well as the putative interacting regions between PpcA and its redox partners. The solution structure of PpcA will constitute the foundation for studies aimed at mapping out in detail these interacting regions.

Fonseca, BM, Paquete CM, Salgueiro CA, Louro RO.  2012.  The role of intramolecular interactions in the functional control of multiheme cytochromes c. FEBS Lett. 586(5):504-509. AbstractWebsite

Detailed thermodynamic and structural data measured in soluble monomeric multiheme cytochromes c provided the basis to investigate the functional significance of interactions between redox co-factors. The steep decay of intramolecular interactions with distance means that close proximity of the redox centers is necessary to modulate the intrinsic reduction potentials in a significant way. This ensures selection of specific populations during redox activity in addition to maintaining fast intramolecular electron transfer. Therefore, intramolecular interactions between redox co-factors play an important role in establishing the biological function of the protein by controlling how electrons flow through and are distributed among the co-factors.

Maiti, BK, Avilés T, Matzapetakis M, Moura I, Pauleta SR, Moura JJG.  2012.  Synthesis of [MoS4]2 – M (M = Cu and Cd) clusters: Potential NMR structural probes for orange protein. Eur J Inorg Chem . 2012:4159-4166.
Barquinha, Martins, Pereira, Fortunato E.  2012.  Transparent Oxide Electronics: From Materials to Devices. : John Wiley & Sons, Ltd
Bonifacio, VDB, Correia VG, Pinho MG, Lima JC, Aguiar-Ricardo A.  2012.  Blue emission of carbamic acid oligooxazoline biotags. Materials Letters. 81:205-208. Abstract
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Pina, F, Melo MJ, Laia CAT, Parola JA, Lima JC.  2012.  Chemistry and applications of flavylium compounds: a handful of colours. Chemical Society Reviews. 41:869-908., Number 2 Abstract
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Palma, AS, Liu Y, Zhang Y, Zhang H, Luis AS, Carvalho AL, Gilbert HJ, Boraston A, Fontes CMGA, Chai W, Ten F.  2012.  Designer-oligosaccharide microarrays to decipher ligands in mammalian and prokaryotic glucan-recognition systems. Glycobiology. 22:1612-1613., Number 11 AbstractWebsite
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Timoteo, CG, Guilherme M, Penas D, Folgosa F, Tavares P, Pereira AS.  2012.  Desulfovibrio vulgaris bacterioferritin uses H2O2 as a co-substrate for iron oxidation and reveals DPS-like DNA protection and binding activities. BIOCHEMICAL JOURNAL. {446}:{125-133}., Number {1} Abstract

A gene encoding Bfr (bacterioferritin) was identified and isolated from the genome of Desulfovibrio vulgaris cells, and overexpressed in Escherichia coli. In vitro, H2O2 oxidizes Fe2+ ions at much higher reaction rates than O-2. The H2O2 oxidation of two Fe2+ ions was proven by Mossbauer spectroscopy of rapid freeze-quenched samples. On the basis of the Mossbauer parameters of the intermediate species we propose that D. vulgaris Bfr follows a mineralization mechanism similar to the one reported for vertebrate H-type ferritins subunits, in which a diferrous centre at the ferroxidase site is oxidized to diferric intermediate species, that are subsequently translocated into the inner nanocavity. D. vulgaris recombinant Bfr oxidizes and stores up to 600 iron atoms per protein. This Bfr is able to bind DNA and protect it against hydroxyl radical and DNase deleterious effects. The use of H2O2 as an oxidant, combined with the DNA binding and protection activities, seems to indicate a DPS (DNA-binding protein from starved cells)-like role for D. vulgaris Bfr.