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2014
Morgado, L, Lourenço S, Londer YY, Schiffer M, Pokkuluri PR, Salgueiro CA.  2014.  Dissecting the functional role of key residues in triheme cytochrome PpcA: a path to rational design of G. sulfurreducens strains with enhanced electron transfer capabilities. PLoS One. 9(8):e105566. AbstractWebsite

PpcA is the most abundant member of a family of five triheme cytochromes c7 in the bacterium Geobacter sulfurreducens (Gs) and is the most likely carrier of electrons destined for outer surface during respiration on solid metal oxides, a process that requires extracellular electron transfer. This cytochrome has the highest content of lysine residues (24%) among the family, and it was suggested to be involved in e-/H(+) energy transduction processes. In the present work, we investigated the functional role of lysine residues strategically located in the vicinity of each heme group. Each lysine was replaced by glutamine or glutamic acid to evaluate the effects of a neutral or negatively charged residue in each position. The results showed that replacing Lys9 (located near heme IV), Lys18 (near heme I) or Lys22 (between hemes I and III) has essentially no effect on the redox properties of the heme groups and are probably involved in redox partner recognition. On the other hand, Lys43 (near heme IV), Lys52 (between hemes III and IV) and Lys60 (near heme III) are crucial in the regulation of the functional mechanism of PpcA, namely in the selection of microstates that allow the protein to establish preferential e-/H(+) transfer pathways. The results showed that the preferred e-/H(+) transfer pathways are only established when heme III is the last heme to oxidize, a feature reinforced by a higher difference between its reduction potential and that of its predecessor in the order of oxidation. We also showed that K43 and K52 mutants keep the mechanistic features of PpcA by establishing preferential e-/H+ transfer pathways at lower reduction potential values than the wild-type protein, a property that can enable rational design of Gs strains with optimized extracellular electron transfer capabilities.

Gouveia, JP, Dias L, Martins I, Seixas J.  2014.  Effects of renewables penetration on the security of Portuguese electricity supply. Applied Energy. 123:438–447. AbstractWebsite

The increase of renewables in power sector, together with the increase of their electricity share in final energy consumption, is changing our perception about energy security with diverse and contradictory statements. The Portuguese security of electricity supply is analyzed in this study by comparing selected indicators for 2. years before and after the high increase of onshore wind since 2005. Our goal is to find how the security of electricity supply was impacted by the penetration of renewables, taking a supply chain approach. Our analysis highlights that the penetration of renewables has decreased the energy dependence of the power sector by more than 20% between 2004 and 2011, while risks related to the concentration of natural gas suppliers and to the still-high share of fossil fuels suffering from price volatility are discussed. We observed a significant improvement in power interconnections with Spain, as well as an increase of the de-rated generation capacity margin, allowing proper management of renewable power intermittency if necessary, thereby improving power security. Although the share of intermittent renewables almost quadrupled in total installed capacity between those years, the indicators reveal an improvement in the quality of transport and distribution when delivering electricity to end-users. Although electricity prices increased, mainly due to taxes, the lack of energy efficiency is an aspect deserving improvement to alleviate the pressure on electricity security, mainly at high peak demands.

Martins, R, Amado MP.  2014.  Efficiency and energetic performance on the rehabilitation of residential buildings. 40th IAHS World Congress in Housing – Sustainable Housing Construction,. :100., Funchal, Madeira: Univ. Coimbra, ISBN: 978-989-98949-0-7
Pereira, Goncalves, Correia, Nuno, Pinto, Joana, Pereira, Martins, Fortunato E.  2014.  Electrochromic behavior of NiO thin films deposited by e-beam evaporation at room temperature. Solar Energy Materials and Solar Cells. 120:109-115.
C, N, R. F, M.P.F. G, M. E, B.A. S, R.C.C. M, L. R, T. M.  2014.  Eu3+ luminescence in aluminophosphate glasses. Journal of Luminescence. 145:582-587. AbstractWebsite

With a 4f6 electronic configuration, europium ions in the trivalent charge state are known to be efficient activators in wide band gap matrices. Embedded in the aluminophosphate (Li2O–BaO–Al2O3–La2O3–P2O5) glasses the optically activated Eu3+ ions lead to intense room temperature orange/red luminescence with 16–23 Cd/m2 by using ultraviolet pumping. The as-prepared and heat treated europium doped glasses for temperatures below and above Tg were studied by room temperature Raman spectroscopy, absorption, photoluminescence excitation, temperature dependent and time dependent photoluminescence. When the samples are excited by 325 nm wavelength photons, an enhancement of the red luminescence intensity by ca. one order of magnitude was found to occur for temperatures between 14 K and 350 K, for all the doped glasses. On the other hand, by using resonant excitation on the 5L6 Eu3+ excited state (λexc~390 nm) the ion emission intensity was found to be nearly constant for temperatures up to 500 K. For higher temperatures a steeper decrease of the luminescence intensity occurs due to non-radiative competitive channels described by activation energies of ca. 235 meV and 450 meV by using 325 and 390 nm wavelength photons as excitation, respectively. The lifetime of the 5D0 level in these glasses is ca. 2.93 ms. A discussion of the thermal population and de-excitation mechanisms is performed.

Zubizarreta, C., Berasategui, E. G., Bayón, R., Escobar Galindo, R., Barros, R., Gaspar, Diana, Nunes, D., Calmeiro, T., Martins, Fortunato, Barriga J.  2014.  Evaluation of the optoelectronic properties and corrosion behavior of Al2O3-doped ZnO films prepared by dc pulsed magnetron sputtering. Journal of Physics D: Applied Physics. 47:13pp.
Dantas, JM, Morgado L, Catarino T, Kokhan O, Pokkuluri PR, Salgueiro CA.  2014.  Evidence for interaction between the triheme cytochrome PpcA from Geobacter sulfurreducens and anthrahydroquinone-2,6-disulfonate, an analog of the redox active components of humic substances. Biochim Biophys Acta. 1837(6):750-760. AbstractWebsite

The bacterium Geobacter sulfurreducens displays an extraordinary respiratory versatility underpinning the diversity of electron donors and acceptors that can be used to sustain anaerobic growth. Remarkably, G. sulfurreducens can also use as electron donors the reduced forms of some acceptors, such as the humic substance analog anthraquinone-2,6-disulfonate (AQDS), a feature that confers environmentally competitive advantages to the organism. Using UV-visible and stopped-flow kinetic measurements we demonstrate that there is electron exchange between the triheme cytochrome PpcA from Gs and AQDS. 2D-(1)H-(15)N HSQC NMR spectra were recorded for (15)N-enriched PpcA samples, in the absence and presence of AQDS. Chemical shift perturbation measurements, at increasing concentration of AQDS, were used to probe the interaction region and to measure the binding affinity of the PpcA-AQDS complex. The perturbations on the NMR signals corresponding to the PpcA backbone NH and heme substituents showed that the region around heme IV interacts with AQDS through the formation of a complex with a definite life time in the NMR time scale. The comparison of the NMR data obtained for PpcA in the presence and absence of AQDS showed that the interaction is reversible. Overall, this study provides for the first time a clear illustration of the formation of an electron transfer complex between AQDS and a G. sulfurreducens triheme cytochrome, shedding light on the electron transfer pathways underlying the microbial oxidation of humics.

Dhadge, VL, Morgado PI, Freitas F, Reis MA, Azevedo AM, Aires-Barros R, Roque ACA.  2014.  An extracellular polymer at the interface of magnetic bioseparations. Journal of the Royal Society Interface. 11(100):20140743. AbstractWebsite

FucoPol, a fucose-containing extracellular polysaccharide (EPS) produced by bacterium Enterobacter A47 using glycerol as the carbon source, was employed as a coating material for magnetic particles (MPs), which were subsequently functionalized with an artificial ligand for the capture of antibodies. The performance of the modified MPs (MP–EPS-22/8) for antibody purification was investigated using direct magnetic separation alone or combined with an aqueous two-phase system (ATPS) composed of polyethylene glycol (PEG) and dextran. In direct magnetic capturing, and using pure protein solutions of human immunoglobulin G (hIgG) and bovine serum albumin (BSA), MP–EPS-22/8 bound 120 mg hIgG g−1 MPs, whereas with BSA only 10 ± 2 mg BSA g−1 MPs was achieved. The hybrid process combining both the ATPS and magnetic capturing leads to a good performance for partitioning of hIgG in the desired phase as well as recovery by the magnetic separator. The MPs were able to bind 145 mg of hIgG g−1 of particles which is quite high when compared with direct magnetic separation. The theoretical maximum capacity was calculated to be 410 ± 15 mg hIgG adsorbed g−1 MPs with a binding affinity constant of 4.3 × 104 M−1. In multiple extraction steps, the MPs bound 92% of loaded hIgG with a final purity level of 98.5%. The MPs could easily be regenerated, recycled and re-used for five cycles with only minor loss of capacity. FucoPol coating allowed both electrostatic and hydrophobic interactions with the antibody contributing to enhance the specificity for the targeted products.

Sequeira, SO, Cabrita EJ, Macedo MF.  2014.  Fungal Biodeterioration of Paper: How are Paper and Book Conservators Dealing with it? An International Survey Restaurator. International Journal for the Preservation of Library and Archival Material. 35(2):181–199. Abstract

Paper biodeterioration by fungi has always been a concern in archives, libraries and museums. Several guidelines have been published regarding the prevention of fungal development in paper collections and recovery of affected objects, but what is actually being implemented from the literature by worldwide paper and book conservators? How common is this type of biodeterioration? What needs to be further studied? In order to access this information we conducted an online international questionnaire with participants from 20 different countries. The results show that fungal biodeterioration is highly common in paper collections. All of the respondents already had to deal with paper deteriorated by fungi, and although the vast majority uses active measures to prevent fungal development, most of them have already experienced active fungal infestations. The mainly used preventive measures are the ones concerned with the control of the environmental conditions in storage and display rooms. Drying the affected paper objects and applying 70% ethanol are the most preferred options to stop active fungal growth. The study of non-toxic and safer antifungals is considered here as the most relevant research topic in the area of paper biodeterioration by fungi, meaning that the options currently available are not totally satisfactory.

Araújo, A, Caro C, Mendes MJ, Nunes D, Fortunato E, Franco R, Águas H, Martins R.  2014.  HIGHLY EFFICIENT NANOPLASMONIC SERS ON CARDBOARD PACKAGING SUBSTRATES. Nanotechnology. 25:415202.
Maia, L, Moura JJG.  2014.  How Biology handles nitrite. Chem Rev. 114:5273-5357.
Barroso, T, Casimiro T, Ferraria A, Mattioli F, Aguiar-Ricardo A, Roque ACA.  2014.  Hybrid monoliths for magnetically-driven protein separations. Adv. Funct. Mater.. 24(28):4528–4541. AbstractWebsite

Monoliths represent powerful platforms for isolation of large molecules with high added value. This work presents a hybrid approach for antibody (Ab) capture and release. Using mostly natural polymers and clean processes, it is possible to create macroporous monoliths with well-defined porous networks, tuneable mechanical properties, and easy functionalization with a biomimetic ligand specific for Ab. Magnetic nanoparticles (MNPs) are embedded on the monolith network to confer a controlled magnetic response that facilitates and accelerates Ab recovery in the elution step. The hybrid monolithic systems prepared with agarose or chitosan/poly(vinyl alcohol) (PVA) blends exhibit promising binding capacities of Abs directly from cell-culture extracts (120 ± 10 mg Ab g−1 support) and controlled Ab magnetically-assisted elution yielding 95 ± 2% recovery. Moreover, a selective capture of mAbs directly from cell culture extracts is achieved yielding a final mAb preparation with 96% of purity.

Pereira, Gaspar, Diana, Guerin, D., Delattre, A., Fortunato, Martins R.  2014.  The influence of fibril composition and dimension on the performance of paper gated oxide transistors. Nanotechnology . 25:11pp.
Dall`Agnol, L, Cordas C, Moura JJG.  2014.  Influence of respiratory substrate in carbon steel corrosion by a sulphate reducing prokaryote model organism. Bioelectrochemistry. 97:43-51.
Luis, DV, Silva J, Tomaz AI, de Almeida RF, Larguinho M, Baptista PV, Martins LM, Silva TF, Borralho PM, Rodrigues CM, Rodrigues AS, Pombeiro AJ, Fernandes AR.  2014.  Insights into the mechanisms underlying the antiproliferative potential of a Co(II) coordination compound bearing 1,10-phenanthroline-5,6-dione: DNA and protein interaction studies. J Biol Inorg Chem. 19(6):787-803.14luisjbic.pdf
Figueiredo, S, Cabral R, Luis D, Fernandes AR, Baptista PV.  2014.  Integration of Gold nanoparticles and liposomes for combined anti-cancer drug delivery. Nanomedicine. (Alexander Seifalian, Achala de Mel, Deepak M. Kalaskar, Eds.)., Manchester: One Central Press (OCP)conjugation_of_gold_nanoparticles_and_liposomes_for_combined_vehicles_of_drug_delivery_in_cancer.pdf
Sanguino P, Monteiro T, Marques F, Dias CJ, Igreja R, Franco R.  2014.  INTERDIGITATED CAPACITIVE IMMUNOSENSORS WITH PVDF IMMOBILIZATION LAYERS. IEEE SENSORS JOURNAL. 14(4):1260-1265.
Veigas, Bruno, Branquinho, R., Pinto, Joana, Wojcik, Pawel Jerzy, Martins, Fortunato, Baptista PV.  2014.  Ion sensing (EIS) real-time quantitative monitorization of isothermal DNA amplification. Biosensors and Bioelectronics. 52:50-55.
Costa, Veigas, Bruno, Jacob, Jorge M., Santos, GMC, Santos, GMC, Baptista, Ana Catarina, Martins, Inacio, Joao, Fortunato E.  2014.  A low cost, safe, disposable, rapid and self-sustainable paper-based platform for diagnostic testing: lab-on-paper. Nanotechnology. 25(9):12pp..
Arcau, J, Andermark V, Aguiló E, Gandioso A, Moro A, Cetina M, Lima JC, Rissanen K, Ottb I, Rodríguez L.  2014.  Luminescent alkynyl-gold(I) coumarin derivatives and their biological activity. Dalton Transactions. 43:4426-4436. Abstract

Luminescent alkynyl-gold(I) coumarin derivatives and their biological activity

The synthesis and characterization of three propynyloxycoumarins are reported in this work together with the formation of three different series of gold(I) organometallic complexes. Neutral complexes are constituted by water soluble phosphines (PTA and DAPTA) which confer water solubility to them. The X-ray crystal structure of 7-(prop-2-in-1-yloxy)-1-benzopyran-2-one and its corresponding dialkynyl complex is also shown and the formation of rectangular dimers for the gold derivative in the solid state can be observed. A detailed analysis of the absorption and emission spectra of both ligands and complexes allows us to attribute the luminescent behaviour to the coumarin organic ligand. Moreover, the presence of the gold(I) metal atom seems to be responsible for an increase of coumarin phosphorescence emission. The biological activity of the complexes showed that the anionic complexes triggered strong cytotoxic effects in two different cell lines whereas the neutral gold alkynyl complexes led to lower effects against tumor cell growth. Thioredoxin reductase (TrxR) inhibition was very strong in the case of the neutral complexes (IC50 values below 0.1 μM) but moderate for the anionic complexes (IC50 values above 0.8 μM).

Carepo, MS, Pauleta SR, Wedd AG, Moura JJG, Moura I.  2014.  Mo-Cu metal cluster formation and binding in an orange protein isolated from Desulfovibrio gigas. J Biol Inorg Chem. 19:605-614.
Gaspar, Diana, Fernandes, de Oliveira, Pedro Guedes, Fernandes, Grey, P., Pontes, R. V., Pereira, Martins, Godinho, M. H., Fortunato E.  2014.  Nanocrystalline cellulose applied simultaneously as the gate dielectric and the substrate in flexible field effect transistors. Nanotechnology. 25(9)
Loureiro, J, Santos JR, Nogueira A, Wyczisk F, Divay L, Reparaz S, Alzina F, Torres CMS, Cuffe J, Montemor F, Martins R, Ferreira I.  2014.  Nanostructured p-type Cr/V2O5 thin films with boosted thermoelectric properties. J. Mater. Chem. A. 2(18):6456-6462. AbstractWebsite

The urgent need for non-toxic and abundant thermoelectric materials has become a significant motivation to improve the figures of merit of metal oxides in order to remove the barrier towards their widespread use for thermoelectric applications. Here we show the influence of a Cr layer in boosting the thermoelectric properties of vanadium pentoxide (V2O5) thin films, deposited by thermal evaporation and annealed at 500 °C. The Cr to V2O5 thickness ratio controls the morphological and thermoelectric properties of the thin films produced. The optimized Seebeck coefficient and power factor values at room temperature are +50 μV K−1 and 7.9 × 10−4 W m−1 K−2, respectively. The nanograin structure of the films is responsible for an improvement in the electrical conductivity up to 3 × 105 (Ω m)−1 with a typical thermal conductivity of 1.5 W m−1 K−1. These results combine to yield promising p-type thermoeletric CrV2O5 thin films with a ZT of 0.16 at room temperature.

Silveira, CM, Almeida MG, Moura JJG.  2014.  Nitrite biosensing - Electrochemical biosensors based on cytochrome c nitrite reductase from Desulfovibrio desulfuricans ATCC 27774. , ISBN 978-3-659-10593-7: Lambert Academic Publishing (ISBN 978-3-659-10593-7)
Maiti, BK, Maia LB, Pal K, Pakira B, Aviles T, Moura I, Pauleta SR, Nuñez JL, Rizzi AC, Brondino CD, Sarkar S, Moura JJG.  2014.  One Electron Reduced Square Planar Bis(benzene-1,2-dithiolato) Copper Dianionic Complex and Redox Switch by O2/HO-. Inorg Chem. 53:12799-12808.
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