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2013
Baptista, AC, Soares PIP, Ferreira I, Borges JP.  2013.  Nanofibers and nanoparticles in biomedical applications. Bioengineered Nanomaterials. (Tiwari, Atul, Tiwari, Ashutosh, Eds.)., USA: CRC Press (Taylor & Francis Group)
Carja, Gabriela, Dartu, Laura, Okada, Kiyoshi, Fortunato E.  2013.  Nanoparticles of copper oxide on layered double hydroxides and the derived solid solutions as wide spectrum active nano-photocatalysts. Chemical Engineering Journal. 222:60-66.
Fartaria, RPS, Pereira F, Bonifácio VDB, Mata P, Aires-de-Sousa J, Lobo AM.  2013.  NavMol 2.0 – A Molecular Structure Navigator/Editor for Blind and Visually Impaired Users. Eur. J. Org. Chem. 8:1415–1419.Website
Pimenta, J, Viegas A, Sardinha J, Martins IC, Cabrita EJ, Fontes CMGA, Prates JAM, Pereira RMLN.  2013.  NMR Solution Structure and SRP54M predicted interaction of the N-Terminal sequence (1-30) of the ovine Doppel protein. Peptides. 49:32-40. AbstractWebsite

Prion protein (PrPC) biosynthesis involves a multi-step process that includes translation and post-translational modifications. While PrP has been widely investigated, for the homolog Doppel (Dpl), limited knowledge is available. In this study, we focused on a vital step of eukaryotic protein biosynthesis: targeting by the signal recognition particle (SRP). Taking the ovine Dpl (OvDpl(1-30)) peptide as a template, we studied its behavior in two different hydrophobic environments using CD and NMR spectroscopy. In both trifluoroethanol (TFE) and dihexanoyl-sn-glycero-3-phosphatidylcholine (DHPC), the OvDpl(1-30) peptide revealed to fold in an alpha-helical conformation with a well-defined central region extending from residue Cys8 until Ser22. The NMR structure was subsequently included in a computational docking complex with the conserved M-domain of SRP54 protein (SRP54M), and further compared with the N-terminal structures of mouse Dpl and bovine PrPC proteins. This allowed the determination of (i) common predicted N-terminal/SRP54M polar contacts (Asp331, Gln335, Glu365 and Lys432) and (ii) different N–C orientations between prion and Dpl peptides at the SRP54M hydrophobic groove, that are in agreement with each peptide electrostatic potential. Together, these findings provide new insights into the biosynthesis of prion-like proteins. Besides they also show the role of protein conformational switches in signalization toward the endoplasmic membrane, a key event of major significance in the cell cycle. They are thus of general applicability to the study of the biological function of prion-like as well as other proteins.

Vale, TM, Dias RJ, Lourenço JM.  2013.  On the Relevance of Total-Order Broadcast Implementations in Replicated Software Transactional Memories. Multicore Software Engineering, Performance, and Tools. 8063(João M. Lourenço, Farchi, Eitan, Eds.).:49–60.: Springer Berlin Heidelberg Abstract2013-musepat.pdf

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Figueiredo, V., Pinto, Joana, Deuermeier, J., Barros, R., Alves, C, Martins, Fortunato E.  2013.  p-Type CuxO Thin-Film Transistors Produced by Thermal Oxidation. Journal of Display Technology. 9(9):735-740.
Parthiban, S., Elangovan, E., Nayak, Pradipta K., Gonçalves, G., Nunes, D., Pereira, Barquinha, Busani, Tito, Fortunato, Martins R.  2013.  Performances of Microcrystalline Zinc Tin Oxide Thin-Film Transistors Processed by Spray Pyrolysis. Journal of Display Technology, . 9(10):825-831.
Ramos, A.M., Pereira, Cidade, M.T., Pereira, Branquinho, R., Pereira, Martins, Fortunato E.  2013.  Preparation and characterization of cellulose nanocomposite hydrogels as functional electrolytes. Solid State Ionics. 242:26-32.
Rodrigues, L. C., Silva, M. A. G., Smith, Michael J., Gonçalves, G., Fortunato E.  2013.  Preparation and Characterization of Hybrid Oxyethylene/Siloxane Electrolyte Systems. Electroanalysis. 25(2):515–522.
Gouveia, JP, Seixas J, Labriet M, Fortes P, Gargiulo M.  2013.  Prospective scenarios for the adoption of CCS technologies in the Iberian Peninsula. Sustainable Energy Technologies and Assessments. 2:31–41. AbstractWebsite

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Martins, Ahnood, Arman, Correia, Nuno, Pereira, Barros, R., Barquinha, Costa, Ferreira, Nathan, Arokia, Fortunato E.  2013.  Recyclable, Flexible, Low-Power Oxide Electronics. Advanced Functional Materials. 23(17):2153-2161.
Araújo, A, Barros R, Mateus T, Gaspar D, Neves N, Vicente A, Filonovich SA, Barquinha P, Fortunato E, Ferraria AM, do Rego ABM, Bicho A, Águas H, Martins R.  2013.  Role of a disperse carbon interlayer on the performances of tandem a-Si solar cells. Science and Technology of Advanced Materials. 14(4)
Amado, M, Rodrigues P, Poggi F, Freitas J.  2013.  Solar Urban Planning to EU 20-20-20 Targets. Portugal SB 13 - CONTRIBUTION OF SUSTAINABLE BUILDING TO MEET EU 20-20-20 TARGETS. :697-708., Guimaraes, PT: iiSBE PORTUGAL
Borlido, L, Moura L, Azevedo AM, Roque ACA, Aires‐Barros MR, Farinha JPS.  2013.  Stimuli‐Responsive magnetic nanoparticles for monoclonal antibody purification. Biotechnology Journal. 8(6):709–717. AbstractWebsite

Monoclonal antibodies (mAbs) are important therapeutic proteins. One of the challenges facing large-scale production of monoclonal antibodies is the capacity bottleneck in downstream processing, which can be circumvented by using magnetic stimuli-responsive polymer nanoparticles. In this work, stimuli-responsive magnetic particles composed of a magnetic poly(methyl methacrylate) core with a poly(N-isopropylacrylamide-co-acrylic acid) (P(NIPAM-co-AA)) shell cross-linked with N, N'-methylenebisacrylamide were prepared by miniemulsion polymerization. The particles were shown to have an average hydrodynamic diameter of 317 nm at 18°C, which decreased to 277 nm at 41°C due to the collapse of the thermo-responsive shell. The particles were superparamagnetic in behavior and exhibited a saturation magnetization of 12.6 emu/g. Subsequently, we evaluated the potential of these negatively charged stimuli-responsive magnetic particles in the purification of a monoclonal antibody from a diafiltered CHO cell culture supernatant by cation exchange. The adsorption of antibodies onto P(NIPAM-co-AA)-coated nanoparticles was highly selective and allowed for the recovery of approximately 94% of the mAb. Different elution strategies were employed providing highly pure mAb fractions with host cell protein (HCP) removal greater than 98%. By exploring the stimuli-responsive properties of the particles, shorter magnetic separation times were possible without significant differences in product yield and purity.

Ferreira, I, Baptista AC, Leitão JP, Soares J, Fortunato E, Martins R, Borges JP.  2013.  Strongly Photosensitive and Fluorescent F8T2 Electrospun Fibers. Macromol Mater Eng. 298(2):174-180., Number 2 AbstractWebsite

Electrospun fibers of poly[(9,9-dioctylfluorenyl-2,7-diyl)-co-bithiophene] (F8T2) with exceptional electro-optical performance are obtained. The I/T characteristics measured in fibers with 7–15 µm diameter and 1 mm length show a semiconductor behavior; their thermal activation energy is 0.5 eV and the dark conductivity at RT is 5 × 10−9 (Ω cm)−1. Besides exhibiting a photosensitivity of about 60 under white light illumination with a light power intensity of 25 mW · cm−2, the fibers also attain RT photoluminescence in the cyan, yellow, and red wavelength range under ultraviolet, blue, and green light excitation, respectively. Optical microscope images of F8T2 reveal homogeneous electrospun fibers, which are in good agreement with the uniformly radial fluorescence observed.

Alves, C, Rodrigues, L. C., Andrade, J. R., Pawlicka, A., Pereira, Martins, Fortunato, Silva MM.  2013.  Study and Characterization of a Novel Polymer Electrolyte Based on Agar Doped with Magnesium Triflate. Molecular Crystals and Liquid Crystals. 570(1):1-11.
Cerqueira, N, Fernandes P, González P, Moura JJG, Ramos MJ.  2013.  The sulfur-shift: an activation mechanism for periplasmic nitrate reductase and formate dehydrogenase. Inorg Chem. 52:10766-10772.
Thorsing, M, Klitgaard JK, Atilano ML, Skov MN, Kolmos HJ, Filipe SR, Kallipolitis BH.  2013.  Thioridazine induces major changes in global gene expression and cell wall composition in methicillin-resistant Staphylococcus aureus USA300. PLoS One. 8:e64518.
Fortes, P, Simões S, Seixas J, Regemorter DV, Ferreira F.  2013.  Top-down and bottom-up modelling to support low-carbon scenarios: climate policy implications. Climate Policy. 13:285–304., Number 3 AbstractWebsite

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Bahubalindruni, Ganga, Tavares, Vitor Grade, Barquinha, Duarte, Candido, de Oliveira, Pedro Guedes, Martins, Fortunato E.  2013.  Transparent Current Mirrors With a-GIZO TFTs: Neural Modeling, Simulation and Fabrication. Journal of Display Technology. 9(12):1001-1006.
Amado, M, Freitas J, Rodrigues E, Ribeiro R.  2013.  Walkability as a Strategy towards Inclusive Communities: Case of a Portuguese Small Town. International Journal of Civil, Architectural Science and Engineering. Vol. nº 7(Nº 8):1-7.
Daniel, CI, Chavez FV, Feio G, Portugal CA, Crespo JG, Sebastiao PJ.  2013.  1H NMR relaxometry, viscometry, and PFG NMR studies of magnetic and nonmagnetic ionic liquids. J Phys Chem B. 117:11877-84., Number 39 AbstractWebsite

A study is presented of the molecular dynamics and of the viscosity in pure [Aliquat][Cl] ionic liquid and in a mixture of [Aliquat][Cl] with 1% (v/v) of [Aliquat][FeCl4]. The (1)H spin-lattice relaxation rate, R1, was measured by NMR relaxometry between 8 and 300 MHz. In addition, the translation self-diffusion, D, was measured by pulse field gradient NMR. The ILs' viscosity was measured as a function of an applied magnetic field, B, and it was found that the IL mixture's viscosity decreased with increasing B, whereas the [Aliquat][Cl] viscosity is independent of B. All experimental results were analyzed taking into account the viscosity's magnetic field dependence, assuming a modified Stokes-Einstein diffusion/viscosity relation. The main difference between the relaxation mechanisms responsible for R1 in the two IL systems is related to the additional paramagnetic relaxation contribution associated with the (1)H spins-[FeCl4] paramagnetic moments' interactions. Cross-relaxation cusps in the R1 dispersion, associated with (35)Cl and (1)H nuclear spins in the IL systems, were detected. The R1 model considered was successfully fitted to the experimental results, and it was possible to estimate the value of D at zero field in the case of the IL mixture which was consistent with the values of D measured at 7 and 14.1 T and with the magnetic field dependence estimated from the viscosity measurements. It was observed that a small concentration of [Aliquat][FeCl4] in the [Aliquat][Cl] was enough to produce a "superparamagnetic"-like effect and to change the IL mixture's molecular dynamics and viscosity and to allow for their control with an external magnetic field.

Lipinska, ME, Teixeira DMD, Laia CAT, Silva AMG, Rebelo SLH, Freire C.  2013.  beta-Functionalized zinc(II)aminoporphyrins by direct catalytic hydrogenation. Tetrahedron Letters. 54:110-113., Number 1 AbstractWebsite
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Ferreira, JL, Avila MJ, Melo MJ, Ramos AM.  2013.  Early aqueous dispersion paints: Portuguese artists' use of polyvinyl acetate, 1960s-1990s. Studies in Conservation. 58:211-225., Number 3 AbstractWebsite
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