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2011
Cardoso, NV, Batista AG, Ortigueira MD.  2011.  EEG Features Extraction for Sleep Classification and Spindle Detection. Doctoral Conference on Computing on Computing, Electrical and Industrial Systems. Abstract
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Gomes, AC, Bruno SM, Gago S, Lopes RP, Machado DA, Carminatti AP, Valente AA, Pillinger M, Goncalves IS.  2011.  Epoxidation of cyclooctene using soluble or MCM-41-supported molybdenum tetracarbonyl-pyridylimine complexes as catalyst precursors. Journal of Organometallic Chemistry. 696:3543-3550., Number 22 AbstractWebsite
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Freitas, F, Alves VD, Torres CAV, Cruz M, Sousa I, Melo MJ, Ramos AM, Reis MAM.  2011.  Fucose-containing exopolysaccharide produced by the newly isolated Enterobacter strain A47 DSM 23139. Carbohydrate Polymers. 83:159-165., Number 1 AbstractWebsite
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Neves, P, Amarante TR, Gomes AC, Coelho AC, Gago S, Pillinger M, Goncalves IS, Silva CM, Valente AA.  2011.  Heterogeneous oxidation catalysts formed in situ from molybdenum tetracarbonyl complexes and tert-butyl hydroperoxide. Applied Catalysis a-General. 395:71-77., Number 1-2 AbstractWebsite
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Duarte, FJS, Bakalova SM, Cabrita EJ, Santos GA.  2011.  Lewis Acid Catalyzed Reactions of Chiral Imidazolidinones and Oxazolidinones: Insights on the Role of the Catalyst. Journal of Organic Chemistry. 76:6997-7004. Abstract

The mechanism proposed by Evans to justify the selectivity obtained in Lewis acid catalyzed Diels-Alder reactions of cyclopentadiene with acyloxazolidinones has been generalized and used in the rationalization of selectivities obtained in many other systems. However, we recently proposed an alternative mechanism, on the basis of open-chain mono- and bicomplexes, that avoids the need for chelates and explains the selectivity obtained by Evans. In this manuscript we apply our proposal to the catalyzed conjugated addition of amines to acylimidazolidinones, reported by Cardillo, and we clearly show that aluminum chelates are not involved in the reaction, as they induce no selectivity, while Cardillo observed high experimental selectivities. Our data equally show that bicomplexes with carbonyl parallel orientation, proposed by Cardillo to justify the experimental selectivity with nonchelating Lewis acids, indeed induce the opposite selectivity and have also to be dismissed. On the other hand, our mechanistic proposal allows for the full rationalization of the data obtained by Cardillo with aluminum, boron, or zinc Lewis acids and supports our previous proposal on DA cycloadditions of dienes to Evans chiral auxiliary derivatives.

Antunes, R, Coito F, Duarte-Ramos H.  2011.  A Linear Approach towards Modeling Human Behavior. Technological Innovation for Sustainability. :305–314.: Springer Abstract

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Garcia-Alvarez, B, Melero R, Dias FMV, Prates JAM, Fontes CMGA, Smith SP, Romao MJ, Carvalho AL, Llorca O.  2011.  Molecular Architecture and Structural Transitions of a Clostridium thermocellum Mini-Cellulosome. Journal of Molecular Biology. 407:571-580., Number 4 AbstractWebsite
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Baptista, {PV}, c}alo Dória G{\c, Quaresma P, Cavadas M, Neves {CS }, Gomes I, Eaton P, Pereira E, Franco R.  2011.  Nanoparticles in molecular diagnostics. Nanoparticles in Translational Science and Medicine. (Antonio Villaverde, Ed.).:427–488., Netherlands: Elsevier Abstract

The aim of this chapter is to provide an overview of the available and emerging molecular diagnostic methods that take advantage of the unique nanoscale properties of nanoparticles (NPs) to increase the sensitivity, detection capabilities, ease of operation, and portability of the biodetection assemblies. The focus will be on noble metal NPs, especially gold NPs, fluorescent NPs, especially quantum dots, and magnetic NPs, the three main players in the development of probes for biological sensing. The chapter is divided into four sections: a first section covering the unique physicochemical properties of NPs of relevance for their utilization in molecular diagnostics; the second section dedicated to applications of NPs in molecular diagnostics by nucleic acid detection; and the third section with major applications of NPs in the area of immunoassays. Finally, a concluding section highlights the most promising advances in the area and presents future perspectives.

Folgosa, F, Cordas CM, Santos JA, Pereira AS, Moura JJG, Tavares P, Moura I.  2011.  New spectroscopic and electrochemical insights on a class I superoxide reductase: evidence for an intramolecular electron-transfer pathway. BIOCHEMICAL JOURNAL. {438}:{485-494}., Number {3} Abstract

SORs (superoxide reductases) are enzymes involved in bacterial resistance to reactive oxygen species, catalysing the reduction of superoxide anions to hydrogen peroxide. So far three structural classes have been identified. Class I enzymes have two ironcentre-containing domains. Most studies have focused on the catalytic iron site (centre II), yet the role of centre I is poorly understood. The possible roles of this iron site were approached by an integrated study using both classical and fast kinetic measurements, as well as direct electrochemistry. A new heterometallic form of the protein with a zinc-substituted centre I, maintaining the iron active-site centre II, was obtained, resulting in a stable derivative useful for comparison with the native all-iron from. Second-order rate constants for the electron transfer between reduced rubredoxin and the different SOR forms were determined to be 2.8 x 10(7) M(-1) . s(-1) and 1.3 x 10(6) M(-1) . s(-1) for SOR(Fe(IIII)-Fe(II)) and for SOR(Fe(IIII)-Fe(III)) forms respectively, and 3.2 x 10(6) M(-1) s(-1) for the SOR(Zn(II)-Fe(III)) form. The results obtained seem to indicate that centre I transfers electrons from the putative physiological donor rubredoxin to the catalytic active iron site (intramolecular process). In addition, electrochemical results show that conformational changes are associated with the redox state of centre I, which may enable a faster catalytic response towards superoxide anion. The apparent rate constants calculated for the SOR-mediated electron transfer also support this observation.

Rodriguez, L, Lima JC, Pina F, Cacciapaglia R, Di Stefano S, Ruggi A.  2011.  Photophysical Study of Naphthalenophanes: Evidence of Adduct Formation with Molecular Oxygen. Journal of Physical Chemistry a. 115:123-127., Number 2 Abstract
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Bras, JLA, Correia MAS, Romao MJ, Prates JAM, Fontes CMGA, Najmudin S.  2011.  Purification, crystallization and preliminary X-ray characterization of the pentamodular arabinoxylanase CtXyl5A from Clostridium thermocellum. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 67:833-836. AbstractWebsite
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Palma, LB, Coito FV, Gil PS.  2011.  Real-time detection of oscillations in control loops. Power Engineering, Energy and Electrical Drives (POWERENG), 2011 International Conference on. :1–6.: IEEE Abstract

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Pereira, P, Helena Fino M, Coito F, Ventim-Neves M.  2011.  RF integrated inductor modeling and its application to optimization-based design. Analog Integrated Circuits and Signal Processing. :1–9.: Springer Abstract

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Bras, JLA, Cartmell A, Carvalho ALM, Verze G, Bayer EA, Vazana Y, Correia MAS, Prates JAM, Ratnaparkhe S, Boraston AB, Romao MJ, Fontes CMGA, Gilbert HJ.  2011.  Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 108:5237-5242., Number 13 AbstractWebsite
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Corvo, M, de Menezes SC, Magalhães TO, Seferin M, Einloft S, Casimiro T, Cabrita EJ.  2011.  Studying the Solubility of CO2 in Ionic Liquids Using High Pressure NMR. Abstract
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Costa, F, Coito F, Palma L.  2011.  Switched Unfalsified Multicontroller. Technological Innovation for Sustainability. :393–401.: Springer Abstract

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Neves, P, Gago S, Balula SS, Lopes AD, Valente AA, Cunha-Silva L, Almeida Paz FA, Pillinger M, Rocha J, Silva CM, Goncalves IS.  2011.  Synthesis and Catalytic Properties of Molybdenum(VI) Complexes with Tris(3,5-dimethyl-1-pyrazolyl)methane. Inorganic Chemistry. 50:3490-3500., Number 8 AbstractWebsite
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Palma, LB, Coito FV.  2011.  Tuning PCA controllers based on manual control data. Emerging Technologies & Factory Automation (ETFA), 2011 IEEE 16th Conference on. :1–4.: IEEE Abstract

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Coito, F, Palma LB.  2011.  Unfalsification based Fault Tolerant Controller. Emerging Technologies & Factory Automation (ETFA), 2011 IEEE 16th Conference on. :1–4.: IEEE Abstract

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Martins, R, Brás B, Ferreira I, Pereira L, Barquinha P, Correia N, Costa R, Busani T, Gonçalves A, Pimentel A, Fortunato E.  2011.  {Away from silicon era: the paper electronics}. 7940(Teherani, Ferechteh H., Look, David C., Rogers, David J., Eds.).:79400P\{$\backslash$textendash\}79400P\{$\backslash$textendash\}10. Abstract

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Martins, R, Brás B, Ferreira I, Pereira L, Barquinha P, Correia N, Costa R, Busani T, Gonçalves A, Pimentel A, Fortunato E.  2011.  {Away from silicon era: the paper electronics}. Proc. SPIE. 7940(Teherani, Ferechteh H., Look, David C., Rogers, David J., Eds.).:79400P–79400P–10. Abstract

Today there is a strong interest in the scientific and industrial community concerning the use of biopolymers for electronic applications, mainly driven by low-cost and disposable applications. Adding to this interest, we must recognize the importance of the wireless auto sustained and low energy consumption electronics dream. This dream can be fulfilled by cellulose paper, the lightest and the cheapest known substrate material, as well as the Earth's major biopolymer and of tremendous global economic importance. The recent developments of oxide thin film transistors and in particular the production of paper transistors at room temperature had contributed, as a first step, for the development of disposable, low cost and flexible electronic devices. To fulfil the wireless demand, it is necessary to prove the concept of self powered devices. In the case of paper electronics, this implies demonstrating the idea of self regenerated thin film paper batteries and its integration with other electronic components. Here we demonstrate this possibility by actuating the gate of paper transistors by paper batteries. We found that when a sheet of cellulose paper is covered in both faces with thin layers of opposite electrochemical potential materials, a voltage appears between both electrodes -paper battery, which is also self-regenerated. The value of the potential depends upon the materials used for anode and cathode. An open circuit voltage of 0.5V and a short-circuit current density of 1$μ$A/cm2 were obtained in the simplest structure produced (Cu/paper/Al). For actuating the gate of the paper transistor, seven paper batteries were integrated in the same substrate in series, supplying a voltage of 3.4V. This allows proper ON/OFF control of the paper transistor. Apart from that transparent conductive oxides can be also used as cathode/anode materials allowing so the production of thin film batteries with transparent electrodes compatible with flexible, invisible, self powered and wireless electronics.

Martins, R, Nathan A, Barros R, Pereira L\'ıs, Barquinha P, Correia N, Costa R, Ahnood A, Ferreira I, Fortunato E.  2011.  {Complementary metal oxide semiconductor technology with and on paper.}. Advanced materials (Deerfield Beach, Fla.). 23:4491–6., Number 39 AbstractWebsite
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Cândido, AC.  2011.  {Inovação Disruptiva: Reflexões sobre as suas características e implicações no mercado [Disruptive innovation: Reflexions about features and market implications]}. , Number 05/2011: Universidade Nova de Lisboa, IET/CICS.NOVA-Interdisciplinary Centre on Social Sciences, Faculty of Science and Technology Abstract

The study aims at discussing the challenges companies face a highly competitive market, emphasizing the implications of disruptive innovations mainly for companies established in the market. In order to understand the origin of the concept of disruptive innovation, the study also presents the results of network analysis carried out considering the following information: journals in which articles were published, the country of affiliation of the authors, keywords and year of publication. The reflections presented in the study lead us to various conclusions, among them the perception that organizations need more attention to the anticipation of new trends and scenarios in order to fend off the effects of a disruptive innovation introduced.

2010
Veigas, B, Machado D, Perdigão J, Portugal I, Couto I, Viveiros M, Baptista {PV}.  2010.  Au-nanoprobes for detection of SNPs associated with antibiotic resistance in Mycobacterium tuberculosis, oct. Nanotechnology. 21, Number 41: IOP Publishing Abstract

Tuberculosis (TB) is one of the leading causes of infection in humans, causing high morbility and mortality all over the world. The rate of new cases of multidrug resistant tuberculosis (MDRTB) continues to increase, and since these infections are very difficult to manage, they constitute a serious health problem. In most cases, drug resistance in Mycobacterium tuberculosis has been related to mutations in several loci within the pathogen's genome. The development of fast, cheap and simple screening methodologies would be of paramount relevance for the early detection of these mutations, essential for the timely and effective diagnosis and management of MDRTB patients. The use of gold nanoparticles derivatized with thiol-modified oligonucleotides (Au-nanoprobes) has led to new approaches in molecular diagnostics. Based on the differential non-cross-linking aggregation of Au-nanoprobes, we were able to develop a colorimetric method for the detection of specific sequences and to apply this approach to pathogen identification and single base mutations/single nucleotide polymorphisms (SNP) discrimination. Here we report on the development of Au-nanoprobes for the specific identification of SNPs within the beta subunit of the RNA polymerase (rpoB locus), responsible for resistance to rifampicin in over 95% of rifampicin resistant M. tuberculosis strains.

Raimundo, J, Costa PM, Vale C, Costa MH, Moura I.  2010.  DNA damage and metal accumulation in four tissues of feral Octopus vulgaris from two coastal areas in Portugal, Oct. Ecotoxicology and Environmental Safety. 73:1543-1547., Number 7 AbstractWebsite

The alkaline comet assay has been employed for the first time to estimate the basal DNA damage in the digestive gland, gills, kidney and gonads of Octopus vulgaris. Octopuses were captured in two coastal areas adjacent to the cities of Matosinhos (N) and Olhao (S), Portugal. The area of Matosinhos is influenced by discharges of the Douro River, city of Porto, industries and intensive agriculture, while Olhao is an important fisheries port. Previous works point to contrasting metal availability in the two coastal areas. Among the analysed tissues digestive gland presented the highest levels of Zn, Cu, Cd and Pb. Tissues of specimens from Matosinhos exhibited high levels of Cd and from Olhao enhanced Pb concentrations. The DNA damages in digestive gland, gills and kidney were more accentuated in specimens from Matosinhos than from Olhao, suggesting a stronger effect of contaminants. Elevated strand breakages were registered in digestive gland, recognised for its ability to store and detoxify accumulated metals. The DNA damages in kidney, gills and gonads were lower, reflecting reduced metal accumulation or efficient detoxification. The broad variability of damages in the three tissues may also mirror tissue function, specific defences to genotoxicants and cell-cycle turnover. (C) 2010 Elsevier Inc. All rights reserved.