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2005
Brand, T, Cabrita EJ, Berger S.  2005.  Intermolecular interaction as investigated by NOE and diffusion studies, SEP 1 2005. Progress in Nuclear Magnetic Resonance Spectroscopy. 46:159-196., Number 4 Abstract

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Urze, P, Barroso S, Moniz AB.  2005.  Practices and trends of telework in the Portuguese industry: the results of surveys in the textile, metal and software sectors, November. Enterprise and Work Innovation Studies. 1:93-108., Number 1 AbstractWebsite

The aim of the TeleRisk Project on labour relations and professional risks within the context of teleworking in Portugal – supported by IDICT – Institute for Development and Inspection of Working Conditions (Ministry of Labour), is to study the practices and forms of teleworking in the manufacturing sectors in Portugal. The project chose also the software industry as a reference sector, even though it does not intend to exclude from the study any other sector of activity or the so-called “hybrid” forms of work. However, the latter must have some of the characteristics of telework. The project thus takes into account the so-called “traditional” sectors of activity, namely textile and machinery and metal engineering (machinery and equipment), not usually associated to this type of work. However, telework could include, in the so-called “traditional” sectors, other variations that are not found in technologically based sectors. One of the evaluation methods for the dynamics associated to telework consisted in carrying out surveys by means of questionnaires, aimed at employers in the sectors analysed. This paper presents some of the results of those surveys. It is important to mention that, being a preliminary analysis, it means that it does not pretend to have exhausted all the issues in the survey, but has meant that it shows the bigger tendencies, in terms of teleworking practices, of the Portuguese industry.

Urze, P, Barroso S, Moniz AB.  2005.  {Practices and trends of telework in the Portuguese industry: the results of surveys in the textile, metal and software sectors}, November. Enterprise and Work Innovation Studies. 1:93-108., Number 1 AbstractWebsite

The aim of the TeleRisk Project on labour relations and professional risks within the context of teleworking in Portugal – supported by IDICT – Institute for Development and Inspection of Working Conditions (Ministry of Labour), is to study the practices and forms of teleworking in the manufacturing sectors in Portugal. The project chose also the software industry as a reference sector, even though it does not intend to exclude from the study any other sector of activity or the so-called “hybrid” forms of work. However, the latter must have some of the characteristics of telework. The project thus takes into account the so-called “traditional” sectors of activity, namely textile and machinery and metal engineering (machinery and equipment), not usually associated to this type of work. However, telework could include, in the so-called “traditional” sectors, other variations that are not found in technologically based sectors. One of the evaluation methods for the dynamics associated to telework consisted in carrying out surveys by means of questionnaires, aimed at employers in the sectors analysed. This paper presents some of the results of those surveys. It is important to mention that, being a preliminary analysis, it means that it does not pretend to have exhausted all the issues in the survey, but has meant that it shows the bigger tendencies, in terms of teleworking practices, of the Portuguese industry.

Santos-Silva, T, Trincao J, Carvalho AL, Bonifacio C, Auchere F, Moura I, Moura JJ, Romao MJ.  2005.  Superoxide reductase from the syphilis spirochete Treponema pallidum: crystallization and structure determination using soft X-rays, Nov 1. Acta Crystallogr Sect F Struct Biol Cryst Commun. 61:967-70., Number Pt 11 AbstractWebsite

Superoxide reductase is a 14 kDa metalloprotein containing a catalytic non-haem iron centre [Fe(His)4Cys]. It is involved in defence mechanisms against oxygen toxicity, scavenging superoxide radicals from the cell. The oxidized form of Treponema pallidum superoxide reductase was crystallized in the presence of polyethylene glycol and magnesium chloride. Two crystal forms were obtained depending on the oxidizing agents used after purification: crystals grown in the presence of K3Fe(CN)6 belonged to space group P2(1) (unit-cell parameters a = 60.3, b = 59.9, c = 64.8 A, beta = 106.9 degrees) and diffracted beyond 1.60 A resolution, while crystals grown in the presence of Na2IrCl6 belonged to space group C2 (a = 119.4, b = 60.1, c = 65.6 A, beta = 104.9 degrees) and diffracted beyond 1.55 A. A highly redundant X-ray diffraction data set from the C2 crystal form collected on a copper rotating-anode generator (lambda = 1.542 A) clearly defined the positions of the four Fe atoms present in the asymmetric unit by SAD methods. A MAD experiment at the iron absorption edge confirmed the positions of the previously determined iron sites and provided better phases for model building and refinement. Molecular replacement using the P2(1) data set was successful using a preliminary trace as a search model. A similar arrangement of the four protein molecules could be observed.

Pinho, D, Besson S, Silva PJ, de Castro B, Moura I.  2005.  Isolation and spectroscopic characterization of the membrane-bound nitrate reductase from Pseudomonas chlororaphis DSM 50135, May 25. Biochimica Et Biophysica Acta-General Subjects. 1723:151-162., Number 1-3 AbstractWebsite

A nitrate reductase was solubilized with Triton X-100 from the membranes of Pseudomonas chlororaphis DSM 50135 grown microaerobically in the presence of nitrate. Like other membrane-bound nitrate reductases, it contains three subunits, of 129, 66 (64) and 24 kDa, referred to in the literature as alpha, beta and gamma, respectively. Electrocatalytic studies revealed that only the membrane-bound, not the solubilized form of the enzyme, can accept electrons from a menaquinone analog, menadione, whereas both forms can accept electrons from methylviologen. The isolated enzyme possesses several iron-sulfur clusters and a molybdopterin guanine dinucleotide active center. The iron-sulfur clusters can be grouped in two classes according to their redox properties, the high-potential and low-potential clusters. In the as-isolated enzyme, two forms of the molybdenum center, high- and low-pH, are detectable by electron paramagnetic resonance spectroscopy. The low-pH form shows a hyperfine splitting due to a proton, suggesting the presence of an -OHx ligand. Dithionite reduces the Mo(V) center to Mo(W) and subsequent reoxidization with nitrate originates a new Mo(V) signal, identical to the oxidized low-pH form but lacking its characteristic hyperfine splitting. The isolated preparation also contains heme c (in a sub-stoichiometric amount) with the ability to relay electrons to the molybdenum center, suggesting that this nitrate reductase may contain heme c instead of the heme b usually found in this class of enzymes. (c) 2005 Elsevier B.V. All rights reserved.

Pinto, IV, Alves LB, Ortigueira M, Batista A.  2005.  ECG Wave Detector and Delineation with Wavelets, July. International Conference on Computational Intelligence in Medicine and Healthcare, CIMED 2005. Abstract
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Pinto, IV, Alves LB, Ortigueira M, Batista A.  2005.  ECG Wave Detector and Delineation with Wavelets, July. International Conference on Computational Intelligence in Medicine and Healthcare, CIMED 2005. Abstract

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Baptista, {PMRV}, c}alo Dória G{\c, Henriques D, Pereira E, Franco R.  2005.  Colorimetric detection of eukaryotic gene expression with DNA-derivatized gold nanoparticles, jan. Journal of Biotechnology. 119:111–7., Number 2: Elsevier Abstract

Thiol-linked DNA-gold nanoparticles were used in a novel colorimetric method to detect the presence of specific mRNA from a total RNA extract of yeast cells. The method allowed detection of expression of the FSY1 gene that encodes a specific fructose/H+ symporter in Saccharomyces bayanus PYCC 4565. FSY1 is strongly expressed when the yeast is grown in fructose as the sole carbon source, while cells cultivated in glucose as the sole carbon source repress gene expression. The presence of FSY1 mRNA is detected based on color change of a sample containing total RNA extracted from the organism and gold nanoparticles derivatized with a 15-mer of complementary single stranded DNA upon addition of NaCl. If FSY1 mRNA is present, the solution remains pink, changing to blue-purple in the absence of FSY1 mRNA. Direct detection of specific expression was possible from only 0.3 microg of unamplified total RNA without any further enhancement. This novel method is inexpensive, very easy to perform as no amplification or signal enhancement steps are necessary and takes less than 15 min to develop after total RNA extraction. No temperature control is necessary and color change can be easily detected visually.

Baptista, {PMRV}.  2005.  Principles in genetic risk assessment., jan. Ther Clin Risk Manag. 1:15–20., Number 1 Abstract
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More, C, Asso M, Roger G, Guigliarelli B, Caldeira J, Moura J, Bertrand P.  2005.  Study of the spin-spin interactions between the metal centers of Desulfovibrio gigas aldehyde oxidoreductase: identification of the reducible sites of the [2Fe-2S]1+,2+ clusters, Aug 30. Biochemistry. 44:11628-35., Number 34 AbstractWebsite

The aldehyde oxidoreductase from Desulfovibrio gigas belongs to the family of molybdenum hydroxylases. Besides a molybdenum cofactor which constitutes their active site, these enzymes contain two [2Fe-2S](2+,1+) clusters which are believed to transfer the electrons provided by the substrate to an acceptor which is either a FAD group or an electron-transferring protein. When the three metal centers of D. gigas AOR are simultaneously paramagnetic, splittings due to intercenter spin-spin interactions are visible when the EPR spectra are recorded at low temperatures. By studying quantitatively these interactions with a model based on the X-ray crystal structure, which takes into consideration the interactions between the magnetic moments carried by all the metal sites of the system, it is possible to determine the location of the reducible sites of the [2Fe-2S] clusters. When combined with the electron-transfer pathways proposed on the basis of the X-ray crystal structure, the results provide a detailed description of the electron-transfer system of D. gigas AOR.

BRITO PALMA, L, Coito FV, NEVES DA SILVA R.  2005.   Diagnosis of parametric faults based on identification and statistical methods. Decision and Control, 2005 and 2005 European Control Conference. CDC-ECC’05. 44th IEEE Conference on. :3838–3843.: IEEE. Abstract

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Pinto, I, Alves LB, Ortigueira MD, B AG.  2005.  ECG Wave Detection and Delineation with Wavelets. Computational Intelligence in Medicine and Healthcare Conference. : Biopattern. Abstract

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Kuhn, FE, Zhao J, Abrantes M, Sun W, Afonso CAM, Branco LC, Goncalves IS, Pillinger M, Romao CC.  2005.  Catalytic olefin epoxidation with cyclopentadienyl-molybdenum complexes in room temperature ionic liquids. Tetrahedron Letters. 46:47-52., Number 1 AbstractWebsite
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Branco, LC, Serbanovic A, da Ponte MN, Afonso CAM.  2005.  Clean osmium-catalyzed asymmetric dihydroxylation of olefins in ionic liquids and supercritical CO2 product recovery. Chemical Communications. :107-109., Number 1 AbstractWebsite
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BRITO PALMA, L, Coito FV, NEVES DA SILVA R.  2005.  Diagnosis of parametric faults based on identification and statistical methods. Decision and Control, 2005 and 2005 European Control Conference. CDC-ECC’05. 44th IEEE Conference on. :3838–3843.: IEEE Abstract

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Aucejo, R, Alarcon J, Garcia-Espana E, Llinares JM, Marchin KL, Soriano C, Lodeiro C, Bernardo MA, Pina F, Pina J, de Melo JS.  2005.  A new Zn-II tweezer pyridine-naphthalene system - An off-on-off system working in a biological pH window. European Journal of Inorganic Chemistry. :4301-4308., Number 21 AbstractWebsite
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Boer, DR, Muller A, Fetzner S, Lowe DJ, Romao MJ.  2005.  On the purification and preliminary crystallographic analysis of isoquinoline 1-oxidoreductase from Brevundimonas diminuta 7. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 61:137-140. AbstractWebsite
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Schafer, T, Branco LC, Fortunato R, Izak P, Rodrigues CM, Afonso CAM, Crespo JG.  2005.  Opportunities for membrane separation processes using ionic liquids. Ionic Liquids Iiib: Fundamentals, Progress, Challenges and Opportunities: Transformations and Processes. 902(Rogers, R. D., Seddon, K. R., Eds.).:97-110. Abstract
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Serbanovic, A, Branco LC, da Ponte MN, Afonso CAM.  2005.  Osmium catalyzed asymmetric dihydroxylation of methyl trans-cinnamate in ionic liquids, followed by supercritical CO2 product recovery. Journal of Organometallic Chemistry. 690:3600-3608., Number 15 AbstractWebsite
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Lopez-Cortes, A, Bursakov S, Figueiredo A, Thapper AE, Todorovic S, Moura JJ, Ollivier B, Moura I, Fauque G.  2005.  Purification and preliminary characterization of tetraheme cytochrome c3 and adenylylsulfate reductase from the peptidolytic sulfate-reducing bacterium Desulfovibrio aminophilus DSM 12254. Bioinorg Chem Appl. :81-91. AbstractWebsite

Two proteins were purified and preliminarily characterized from the soluble extract of cells (310 g, wet weight) of the aminolytic and peptidolytic sulfate-reducing bacterium Desulfovibrio (D.) aminophilus DSM 12254. The iron-sulfur flavoenzyme adenylylsulfate (adenosine 5'-phosphosulfate, APS) reductase, a key enzyme in the microbial dissimilatory sulfate reduction, has been purified in three chromatographic steps (DEAE-Biogel A, Source 15, and Superdex 200 columns). It contains two different subunits with molecular masses of 75 and 18 kDa. The fraction after the last purification step had a purity index (A(278nm) / A(388nm)) of 5.34, which was used for further EPR spectroscopic studies. The D. aminophilus APS reductase is very similar to the homologous enzymes isolated from D. gigas and D. desulfuricans ATCC 27774. A tetraheme cytochrome c(3) (His-heme iron-His) has been purified in three chromatographic steps (DEAE- Biogel A, Source 15, and Biogel-HTP columns) and preliminarily characterized. It has a purity index ([A(553nm) - A(570nm)](red) / A(280nm)) of 2.9 and a molecular mass of around 15 kDa, and its spectroscopic characterization (NMR and EPR) has been carried out. This hemoprotein presents similarities with the tetraheme cytochrome c(3) from Desulfomicrobium (Des.) norvegicum (NMR spectra, and N-terminal amino acid sequence).

Santos-Silva, T, Trincao J, Carvalho AL, Bonifacio C, Auchere F, Moura I, Moura JJG, Romao MJ.  2005.  Superoxide reductase from the syphilis spirochete Treponema pallidum: crystallization and structure determination using soft X-rays. Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 61:967-970. AbstractWebsite
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Bazzicalupi, C, Bencini A, Bianchi A, Danesi A, Giorgi C, Lodeiro C, Pina F, Santarelli S, Valtancoli B.  2005.  A zinc(II)-based receptor for ATP binding and hydrolysis. Chemical Communications. :2630-2632., Number 20 AbstractWebsite
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2004
Moura, JJ, Brondino CD, Trincao J, Romao MJ.  2004.  Mo and W bis-MGD enzymes: nitrate reductases and formate dehydrogenases, Oct. J Biol Inorg Chem. 9:791-9., Number 7 AbstractWebsite

Molybdenum and tungsten are second- and third-row transition elements, respectively, which are found in a mononuclear form in the active site of a diverse group of enzymes that generally catalyze oxygen atom transfer reactions. Mononuclear Mo-containing enzymes have been classified into three families: xanthine oxidase, DMSO reductase, and sulfite oxidase. The proteins of the DMSO reductase family present the widest diversity of properties among its members and our knowledge about this family was greatly broadened by the study of the enzymes nitrate reductase and formate dehydrogenase, obtained from different sources. We discuss in this review the information of the better characterized examples of these two types of Mo enzymes and W enzymes closely related to the members of the DMSO reductase family. We briefly summarize, also, the few cases reported so far for enzymes that can function either with Mo or W at their active site.