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2013
Amado, M, Lopes T, Ramalhete I.  2013.  ECO-WALL: MODULAR SOLUTION FOR LOW-COST HOUSES. CISBAT 2013. :121-126., Lausane, CH: EPFL, CH
Amado, M, Amado A, Poggi F, Correia de Freitas J.  2013.  Efficiency Based Model for Solar Urban Planning. International Journal of Civil, Architectural Science and Engineering. Vol. 7(Nº 12):1-5.
Poggi, F, Amado MP.  2013.  ENERGIA SOLAR: FATOR NO PROCESSO DE PLANEAMENTO DA CIDADE Solar Energy: Factor in the Process of Planning City. 2º Congresso Internacional da habitação no Espaço Lusófono. :240-241., Lisboa, PT: LNEC
Barroso, T, Hussain A, Roque ACA, Aguiar‐Ricardo A.  2013.  Functional monolithic platforms: Chromatographic tools for antibody purification. Biotechnology journal. 8(6):671–681. AbstractWebsite

Polymer monoliths are an efficient platform for antibody purification. The use of monoclonal antibodies (mAbs) and engineered antibody structures as therapeutics has increased exponentially over the past few decades. Several approaches use polymer monoliths to purify large quantities of antibody with defined clinical and performance requirements. Functional monolithic supports have attracted a great deal of attention as they offer practical advantages for antibody purification, such as more rapid analysis, smaller sample volume requirements and the opportunity for a greater target molecule enrichment. This review focuses on the development of synthetic and natural polymer-based monoliths for antibody purification. The materials and methods employed in monolith production are discussed, highlighting the properties of each system. We also review the structural characterization techniques available using monolithic systems and their performance under different chromatographic approaches to antibody capture and release. Finally, a summary of monolithic platforms developed for antibody separation is presented, as well as expected trends in research to solve current and future challenges in this field. This review comprises a comprehensive analysis of proposed solutions highlighting the remarkable potential of monolithic platforms.

Alves R.D., L.C. R, J.R. A, Fernandes M., Pinto J.V., L. P, Pawlicka A., R. M, Fortunato E., Bermudez V.D., M.M. S.  2013.  GelatinnZn(CF3SO3)2 Polymer Electrolytes for Electrochromic Devices. Electroanalysis. 25(6):1483-1490.
Barroso, T, Lourenço A, Araújo M, Bonifácio VDB, Roque ACA, Aguiar-Ricardo A.  2013.  A green approach toward antibody purification: a sustainable biomimetic ligand for direct immobilization on (bio)polymeric supports. Journal of Molecular Recognition. 26(12):662-671.
Carvalho, S, Raposo AC, Martins FB, Grosso AR, Sridhara SC, Rino J, Carmo-fonseca M, de Almeida SF.  2013.  Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription. Nucleic acids research. 41:2881–93., Number 5 AbstractWebsite

Histone H3 of nucleosomes positioned on active genes is trimethylated at Lys36 (H3K36me3) by the SETD2 (also termed KMT3A/SET2 or HYPB) methyltransferase. Previous studies in yeast indicated that H3K36me3 prevents spurious intragenic transcription initiation through recruitment of a histone deacetylase complex, a mechanism that is not conserved in mammals. Here, we report that downregulation of SETD2 in human cells leads to intragenic transcription initiation in at least 11% of active genes. Reduction of SETD2 prevents normal loading of the FACT (FAcilitates Chromatin Transcription) complex subunits SPT16 and SSRP1, and decreases nucleosome occupancy in active genes. Moreover, co-immunoprecipitation experiments suggest that SPT16 is recruited to active chromatin templates, which contain H3K36me3-modified nucleosomes. Our results further show that within minutes after transcriptional activation, there is a SETD2-dependent reduction in gene body occupancy of histone H2B, but not of histone H3, suggesting that SETD2 coordinates FACT-mediated exchange of histone H2B during transcription-coupled nucleosome displacement. After inhibition of transcription, we observe a SETD2-dependent recruitment of FACT and increased histone H2B occupancy. These data suggest that SETD2 activity modulates FACT recruitment and nucleosome dynamics, thereby repressing cryptic transcription initiation.

Borlido, L, Azevedo AM, Roque ACA, Aires-Barros MR.  2013.  Magnetic separations in biotechnology. Biotechnology Advances. 31(8):1374-1385. AbstractWebsite

Magnetic separations are probably one of the most versatile separation processes in biotechnology as they are able to purify cells, viruses, proteins and nucleic acids directly from crude samples. The fast and gentle process in combination with its easy scale-up and automation provide unique advantages over other separation techniques. In the midst of this process are the magnetic adsorbents tailored for the envisioned target and whose complex synthesis spans over multiple fields of science. In this context, this article reviews both the synthesis and tailoring of magnetic adsorbents for bioseparations as well as their ultimate application.

Fartaria, RPS, Pereira F, Bonifácio VDB, Mata P, Aires-de-Sousa J, Lobo AM.  2013.  NavMol 2.0 – A Molecular Structure Navigator/Editor for Blind and Visually Impaired Users. Eur. J. Org. Chem. 8:1415–1419.Website
Figueiredo, V., Pinto, Joana, Deuermeier, J., Barros, R., Alves, C, Martins, Fortunato E.  2013.  p-Type CuxO Thin-Film Transistors Produced by Thermal Oxidation. Journal of Display Technology. 9(9):735-740.
Amado, MP, Poggi F.  2013.  PLANNING FOR SOLAR SMART CITIES. CISBAT 2013. :1017-1022., Lausanne, CH: EPFL, CH
Maiti, BK, Avilés T, Carepo MS, Moura I, S.R. P, Moura JJG.  2013.  Rearrangement of Mo-Cu-S Cluster Reflects the Structural Instability of Orange Protein Cofactor. Z Anorg Allg Chem. 639:1361-1364.
Martins, Ahnood, Arman, Correia, Nuno, Pereira, Barros, R., Barquinha, Costa, Ferreira, Nathan, Arokia, Fortunato E.  2013.  Recyclable, Flexible, Low-Power Oxide Electronics. Advanced Functional Materials. 23(17):2153-2161.
Amado, MP, Almeida H, Ribeiro R, Gameiro AP.  2013.  REGENERAÇÃO DA CIDADE ATRAVÉS DO PROCESSO DE REABILITAÇÃO DO PATRIMÓNIO EDIFICADO Regeneration of the city trough the process of rehabilitation of built heritage. 2º Congresso Internacional da habitação no Espaço Lusófono. :168-169., Lisboa, PT: LNEC
Araújo, A, Barros R, Mateus T, Gaspar D, Neves N, Vicente A, Filonovich SA, Barquinha P, Fortunato E, Ferraria AM, do Rego ABM, Bicho A, Águas H, Martins R.  2013.  Role of a disperse carbon interlayer on the performances of tandem a-Si solar cells. Science and Technology of Advanced Materials. 14(4)
Amado, M, Rodrigues P, Poggi F, Freitas J.  2013.  Solar Urban Planning to EU 20-20-20 Targets. Portugal SB 13 - CONTRIBUTION OF SUSTAINABLE BUILDING TO MEET EU 20-20-20 TARGETS. :697-708., Guimaraes, PT: iiSBE PORTUGAL
Borlido, L, Moura L, Azevedo AM, Roque ACA, Aires‐Barros MR, Farinha JPS.  2013.  Stimuli‐Responsive magnetic nanoparticles for monoclonal antibody purification. Biotechnology Journal. 8(6):709–717. AbstractWebsite

Monoclonal antibodies (mAbs) are important therapeutic proteins. One of the challenges facing large-scale production of monoclonal antibodies is the capacity bottleneck in downstream processing, which can be circumvented by using magnetic stimuli-responsive polymer nanoparticles. In this work, stimuli-responsive magnetic particles composed of a magnetic poly(methyl methacrylate) core with a poly(N-isopropylacrylamide-co-acrylic acid) (P(NIPAM-co-AA)) shell cross-linked with N, N'-methylenebisacrylamide were prepared by miniemulsion polymerization. The particles were shown to have an average hydrodynamic diameter of 317 nm at 18°C, which decreased to 277 nm at 41°C due to the collapse of the thermo-responsive shell. The particles were superparamagnetic in behavior and exhibited a saturation magnetization of 12.6 emu/g. Subsequently, we evaluated the potential of these negatively charged stimuli-responsive magnetic particles in the purification of a monoclonal antibody from a diafiltered CHO cell culture supernatant by cation exchange. The adsorption of antibodies onto P(NIPAM-co-AA)-coated nanoparticles was highly selective and allowed for the recovery of approximately 94% of the mAb. Different elution strategies were employed providing highly pure mAb fractions with host cell protein (HCP) removal greater than 98%. By exploring the stimuli-responsive properties of the particles, shorter magnetic separation times were possible without significant differences in product yield and purity.

Alves, C, Rodrigues, L. C., Andrade, J. R., Pawlicka, A., Pereira, Martins, Fortunato, Silva MM.  2013.  Study and Characterization of a Novel Polymer Electrolyte Based on Agar Doped with Magnesium Triflate. Molecular Crystals and Liquid Crystals. 570(1):1-11.
Almeida, RA, Turano P, Moura I, Moura JJG, Pauleta SR.  2013.  Superoxide reductase: different interaction modes with its two redox partners. ChemBioChem. 14:1858–1866.
Amado, M, Lucas V, Ribeiro M.  2013.  Sustainable Construction: Value of Certification. Proc. of the Intl. Conf. on Advances in Civil, Structural and Environmental Engineering-- ACSEE 2013. :180-187., Zurich, CH: Institute of Research Engineers and Doctors
Amado, Miguel P., Barroso L.  2013.  SUSTAINABLE CONSTRUCTION: WATER USE IN RESIDENTIAL BUILDINGS IN PORTUGAL. International Journal of Sustainable Construction Engineering & Technology. Vol 4(No 2):14-22.
Geraldes, I, Amado MP.  2013.  SUSTENTABILIDADE DA CONSTRUÇÃO DE HABITAÇÃO SOCIAL COM RECURSO A LSF Sustainability of Construction of Social Habitation with LSF. 2º Congresso Internacional da habitação no Espaço Lusófono. :145-146., Lisboa, PT: LNEC
Thorsing, M, Klitgaard JK, Atilano ML, Skov MN, Kolmos HJ, Filipe SR, Kallipolitis BH.  2013.  Thioridazine induces major changes in global gene expression and cell wall composition in methicillin-resistant Staphylococcus aureus USA300. PLoS One. 8:e64518.
Amado, M, Freitas J, Rodrigues E, Ribeiro R.  2013.  Walkability as a Strategy towards Inclusive Communities: Case of a Portuguese Small Town. International Journal of Civil, Architectural Science and Engineering. Vol. nº 7(Nº 8):1-7.
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